SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160804

Length: 337 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene160804
CCCTTTCTGCTCTTTCCAAACCGTATTCAACATGTTCAGTATTCTTTCTATACATTAGATGCTTTGTTTCCGAGGCATGCTCTCAGAAATGTGTCTGAGAACAAAGTGGTGATCGAGGCGGATACCCAAGTATCTGCAACTATTGCAGTGCAGGTCGATCAGAGTGCCACTTTTGCTCAAGGAAGTGGGATTTATTCCTAGACACGAGCTCTCTTGAGCAATAGAACTCCATTCAAAGGGCTTTTAGGCCCAAGGTTATGGATGGTAAATATTTTCCAATCAGGGTATACACCCTTTTCCTCGATTCAATTCAAAACCAACCGTGTTAATTGTGACC

Ace file of the UniGene sp_v3.0_unigene160804 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase QRT3 [Arabidopsis thaliana] ref\|NP_001078410.1\| Polygalacturonase QRT3 [Arabidopsis thaliana] sp\|O49432.1\|QRT3_ARATH RecName: Full=Polygalacturonase QRT3; Short=AtQRT3; Short=PG QRT3; AltName: Full=Pectinase QRT3; AltName: Full=Protein Q	-	-	5.0e-08	52%
FL-Next	sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Sma3	cDNA clone:001-204-C08, full insert sequence	-	-	8.285e-06	-

Source	Gene names
Sma3	OSJNBa0070C17.16; Os04g0613200; OsI_17366; OsJ_16135; POPTRDRAFT_553848; VITISV_025312;

Source	InterPros	Term	Type	e value	Identity
Sma3	Parallel beta-helix repeat	IPR006626	-	0.0	-
Sma3	Pectin lyase fold	IPR012334	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G20050.1	QRT3 Pectin lyase-like superfamily protein chr4:10849911-10852090 REVERSE LENGTH=481	3.0e-11	52%
RefSeq	Arabidopsis thaliana	NP_001078410.1	Polygalacturonase QRT3 [Arabidopsis thaliana]	4.0e-11	52%
RefSeq	Populus trichocarpa	XP_002303344.1	predicted protein [Populus trichocarpa]	2.0e-14	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O49432

Fln msg: your sequence is shorter than subject: 67 - 481

Fln protein: PFLLFPNRIQHVQYSFYTLDALFPRHALRNVSENKVVIEADTQVSATIAVQVDQSATFAQGSGIYS*

Protein Length: 68

Fln nts: CCCTTTCTGCTCTTTCCAAACCGTATTCAACATGTTCAGTATTCTTTCTATACATTAGATGCTTTGTTTCCGAGGCATGCTCTCAGAAATGTGTCTGAGAACAAAGTGGTGATCGAGGCGGATACCCAAGTATCTGCAACTATTGCAGTGCAGGTCGATCAGAGTGCCACTTTTGCTCAAGGAAGTGGGATTTATTCCTAG___ACACGAGCTCTCTTGAGCAATAGAACTCCATTCAAAGGGCTTTTAGGCCCAAGGTTATGGATGGTAAATATTTTCCAATCAGGGTATACACCCTTTTCCTCGATTCAATTCAAAACCAACCGTGTTAATTGTGACC

Fln Alignment:

HA8LWWM01CZQWL___PFLLFPNRIQHVQYSFYTLDA-LFPRHALRNVSENKVVIEADTQVSATIAVQVDQ
O49432________________PVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain