SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160627

Length: 462 nt

UniGene Fasta

>sp_v3.0_unigene160627
ATTTCTCCTCCTCCGTCTTTTATCCACGGCTAAGATGTCTCGGTGTGGTATGGTGTGCTTCTTCTATCCATGGTCTGTTATGTCTGCGTGGTTGCCTGCCTCTGTGCGGATGATGCAGTTTGAGAAAATATCAGAGGGTTATGTTTCATGCAGAGACCACATCCCTTGTACAAGCCAAAGAAAGATTCCTTGATGCCAGACATGGATCTTCCGCGTGTTGCTGTGCAGGCAGGAAATGTCCACAATCAGAACCACAAAGGAGCTTCTCAGCAGTGTGATTATTATGTTGAATATGCCGATCATAGCCCTTTTATGGGCGTCCTTGTTAGAGTATTTAGGTTGGTCTAACCGCTAAAAATTCGTTGACAGCAAATTCTGTTAGATGGAATTCATTTCTTTCGAACAACTTTTCAAACTGTGAAATTACTAAATTATGGAACCTGATAATAGATATGGGGATAG

Ace file of the UniGene sp_v3.0_unigene160627

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 227 aas, your sequence is shorter than subject: 116 - 446

Fln protein: ISPPPSFIHG*DVSVWYGVLLLSMVCYVCVVACLCADDAV*ENIRGLCFMQRPHPLYKPKKDSLMPDMDLPRVAVQAGNVHNQNHKGASQQCDYYVEYADHSPFMGVLVRVFRLV*

Protein Length: 117

Fln nts: ATTTCTCCTCCTCCGTCTTTTATCCACGGCTAAGATGTCTCGGTGTGGTATGGTGTGCTTCTTCTATCCATGGTCTGTTATGTCTGCGTGGTTGCCTGCCTCTGTGCGGATGATGCAGTTTGAGAAAATATCAGAGGGTTATGTTTCATGCAGAGACCACATCCCTTGTACAAGCCAAAGAAAGATTCCTTGATGCCAGACATGGATCTTCCGCGTGTTGCTGTGCAGGCAGGAAATGTCCACAATCAGAACCACAAAGGAGCTTCTCAGCAGTGTGATTATTATGTTGAATATGCCGATCATAGCCCTTTTATGGGCGTCCTTGTTAGAGTATTTAGGTTGGTCTAACCGCTAAAAATTCGTTGACAGCAAATTCTGTTAGATGGAATTCATTTCTTTCGAACAACTTTTCAAACTGTGAAATTACTAAATTATGGAACCTGATAATAGATATGGGGATAG

Fln Alignment:

HA8LWWM01BVBQF___PHPLYKPKKDSLMPDMDLPRVAVQAGNVHNQNHKGASQQCDYYVEYADH
B8LRU1________________PHPLYKLKKGSLVPSKDPLCAAVQAGSGHYHNHKEASQRCDYDVAYADH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain