SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160537

Length: 420 nt

UniGene Fasta

>sp_v3.0_unigene160537
ACATCACACTTGCATTCATTTCTCTTCTCATTTCTAAGGTTCCCGAATTCTTGTTTCCAATTATCATGGCACCAGCGAGAGTGGAGAGCCTCGCTTTGAGCGGCCTGGCCGCTATTCCTCCTGAGTATGTGAGACCGGTAGAGGAGAGACCTACTGACTGCGTTCTCAACTTGAAAGGAGGAATGGAGGACGAAGGCCCGCAGATTCCAGTGGTAGATGTTGCCGGATGGGATTCTGGTGACGAGGAGATCAAGAAGGAGATTGGGCGTCAGGTGGCCAAGGCAAGCAGGGAGTGGGGGGTCATGCAACTGTTGAACCATGGCATATCTGATACTCTGATCGAGCCCAGCCAACCCAACCCATTGTCAACCCGAGTCTATTTAAGCCTTTCTCTAGTTTATATATGAGTTGATTGAATTA

Ace file of the UniGene sp_v3.0_unigene160537

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	1.0e-17	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Anthocyanidin synthase	-	-	2.186e-06	-

Source	Gene names
Sma3	ANS1; ANT17; IhANS; IhANS2;

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	L-ascorbic acid binding	GO:0031418	Molecular Function	-
Sma3	leucocyanidin oxygenase activity	GO:0050589	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G22880.1	LDOX, TDS4, TT18, ANS leucoanthocyanidin dioxygenase chr4:12004905-12006059 REVERSE LENGTH=356	4.0e-12	45%
RefSeq	Arabidopsis thaliana	NP_194019.1	leucoanthocyanidin dioxygenase [Arabidopsis thaliana]	6.0e-12	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSM2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 49 aas, your sequence is shorter than subject: 114 - 166

Fln protein: MAPARVESLALSGLAAIPPEYVRPVEERPTDCVLNLKGGMEDEGPQIPVVDVAGWDSGDEEIKKEIGRQVAKASREWGVMQLLNHGISDTLIEPSQPNPLSTRVYLSLSLVYI*

Protein Length: 115

Fln nts: ACATCACACTTGCATTCATTTCTCTTCTCATTTCTAAGGTTCCCGAATTCTTGTTTCCAATTATC_-_ATGGCACCAGCGAGAGTGGAGAGCCTCGCTTTGAGCGGCCTGGCCGCTATTCCTCCTGAGTATGTGAGACCGGTAGAGGAGAGACCTACTGACTGCGTTCTCAACTTGAAAGGAGGAATGGAGGACGAAGGCCCGCAGATTCCAGTGGTAGATGTTGCCGGATGGGATTCTGGTGACGAGGAGATCAAGAAGGAGATTGGGCGTCAGGTGGCCAAGGCAAGCAGGGAGTGGGGGGTCATGCAACTGTTGAACCATGGCATATCTGATACTCTGATCGAGCCCAGCCAACCCAACCCATTGTCAACCCGAGTCTATTTAAGCCTTTCTCTAGTTTATATATGAGTTGATTGAATTA

Fln Alignment:

HA8LWWM01EBIQA___MAPARVESLALSGLAAIXXXXXXXXXXXXTDCVLNLKGGMEDEGPQIPVVDVAGWDSGDEEIKKEIGRQVAKASREWGVMQLLNHGISDTLIEPSQ
A9NSM2________________MAPARVESLALSGLAAIPAEYVRPLEERPTECVLKVKR-VEDEGPQIPVVDVAGWDSADEEIKKEIRRQVAKASREWGVMQLLNHGISETLIERLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain