SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160481

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene160481
GGGTCATATCACATTCATAGATGATTTTCTAGGAAAACTTGGATCTTCTCAACGAAGACCAAGGATGGGGTCTTCAGTCAGTTATAGGAATTCAAGGCCTACCTGGGGAATCAAACAGGAGGGGGATCAAGGTCTTAAGGTTAGATAATGGGGGAGAGTACACCTCCAATGACTTCAAGGATTTCTACAAGGAGGAAAGGATCAAGAGAGAGATGACAATCTCATACAACCCTCAGCGGAATGGGGTT

Ace file of the UniGene sp_v3.0_unigene160481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA	-	-	9.0e-10	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Separated hits, possible frame ERROR between 105 and 120, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 170 aas, your sequence is shorter than subject: 83 - 407

Fln protein: GSYHIHR*FSRKTWIFSTKTKDGVFSQL*EFKAYxxxxxxRGIKVLRLDNGGEYTSNDFKDFYKEERIKREMTISYNPQRNGV

Protein Length: 84

Fln nts: GGGTCATATCACATTCATAGATGATTTTCTAGGAAAACTTGGATCTTCTCAACGAAGACCAAGGATGGGGTCTTCAGTCAGTTATAGGAATTCAAGGCCTACCTxxxxxxxxxxxxxxxGAGGGGGATCAAGGTCTTAAGGTTAGATAATGGGGGAGAGTACACCTCCAATGACTTCAAGGATTTCTACAAGGAGGAAAGGATCAAGAGAGAGATGACAATCTCATACAACCCTCAGCGGAATGGGGTT

Fln Alignment:

HA8LWWM01EK7QO___FSRKTWIFSTKTKDGVFSQL*EFKAYLxxxxxRGIKVLRLDNGGEYTSNDFKDFYKEERIKREMTISYNPQRNGV
B8LKX7________________YSRRIWVYFLKNKDEVFEKFKEFKAFVxxxxxKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain