SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160383

Length: 258 nt

UniGene Fasta

>sp_v3.0_unigene160383
TTGCCAATTTACAAAGATGTGTGGAATAATCCAAAATGCAAATAGATTTTGCAAGGTTCAATAAAGGATGTAATCTTTGTTATGTCAAGAAGTCTAGTAACAGGAAGCAGGATCTATACCATCCCTTACTTGTACCCACTCATTCTTGGAAAAATATTTCAATGGATTTTGTGGGAGGTTTACCAACTACCAAAGAGGGATATCATTAGCTATTTGTGGTAGATGACAAGATCAGCAAGATGTGCATTCTCATACCTG

Ace file of the UniGene sp_v3.0_unigene160383

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF	-	-	2.0e-13	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABB2

Fln msg: atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 60 - 76

Fln protein: SKMQIDFARFNKGCNLCYVKKSSNRKQDLYHPLLVPTHSWKNISMDFVGGLPTTKEGYH*

Protein Length: 61

Fln nts: TTGCCAATTTACAAAGATGTGTGGAATAATCCAAAATGCAAATAGATTTTGCAAGGTTCAATAAAGGATGTAATCTTTGTTATGTCAAGAAGTCTAGTAACAGGAAGCAGGATCTATACCATCCCTTACTTGTACCCACTCATTCTTGGAAAAATATTTCAATGGATTTTGTGGGAGGTTTACCAACTACCAAAGAGGGATATCATTAG___CTATTTGTGGTAGATGACAAGATCAGCAAGATGTGCATTCTCATACCTG

Fln Alignment:

HA8LWWM01B5XHY___ANLQRCVE*SKMQIDFARFNKGCNLCYVKKSSNRKQDLYHPLLVPTHSWKNISMDFVGGLPTTKEGYH*LFVVDD
D5ABB2________________AVLQKYFYWSKLRHDVSKYIRSCSACSIAKPAIKKQGLYTPLPTLDRPWESISMDYMSGLPSTKHGNDYVFVVVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain