SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160257

Length: 355 nt

UniGene Fasta

>sp_v3.0_unigene160257
TTGCTCATCAAGAAGAATGGAAGAAGGCTACGTAAGAAGAATATCAATCCATTATAAGAATGGGGTTTGGGAAATCATTCCTAGACCAAATGACAAATTGGTTGTCACCTCAAAATGTATTTACAAAATCAAACATGCTATTGATGGAAGCATATATAAATACAAAGCTAGATTCGTTGCAAGGGGTTTCTCACAAAAGGAAGGCATAGACTATGTAGAAACCTTTGCTCCTGCTGTAAGGTATAGTACTATAAGATCTTTGGTTTCACTCAGTGTTGCTATGGGATGGAATATCCATCAAATGGATGTCAAAACAACATTTCTAAATGGAACCATTGATGAAGAACTATACATT

Ace file of the UniGene sp_v3.0_unigene160257

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ	-	-	8.0e-27	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	3.117e-25	-

Source	Gene names
Sma3	At2g15650; B1110B01.13; Fourf gag/pol; H0716A07.9; LOC_Os03g11850; LOC_Os03g21050; LOC_Os03g29130; LOC_Os03g31134; LOC_Os03g33640; LOC_Os03g41000; LOC_Os03g44280; LOC_Os03g53560; LOC_Os03g54804; LOC_Os03g56676; LOC_Os03g60230; LOC_Os03g61660; LOC_Os10g017

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	CCAAT-binding factor complex	GO:0016602	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Transcription factor GRAS	IPR005202	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 254 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 113 - 363

Fln protein: MEEGYVRRISIHYKNGVWEIIPRPNDKLVVTSKCIYKIKHAIDGSIYKYKARFVARGFSQKEGIDYVETFAPAVRYSTIRSLVSLSVAMGWNIHQMDVKTTFLNGTIDEELYI

Protein Length: 114

Fln nts: TTGCTCATCAAGAAGA_-_ATGGAAGAAGGCTACGTAAGAAGAATATCAATCCATTATAAGAATGGGGTTTGGGAAATCATTCCTAGACCAAATGACAAATTGGTTGTCACCTCAAAATGTATTTACAAAATCAAACATGCTATTGATGGAAGCATATATAAATACAAAGCTAGATTCGTTGCAAGGGGTTTCTCACAAAAGGAAGGCATAGACTATGTAGAAACCTTTGCTCCTGCTGTAAGGTATAGTACTATAAGATCTTTGGTTTCACTCAGTGTTGCTATGGGATGGAATATCCATCAAATGGATGTCAAAACAACATTTCTAAATGGAACCATTGATGAAGAACTATACATT

Fln Alignment:

HA8LWWM01BLMQ7___KNGVWEIIPRPNDKLVVTSKCIYKIKHAIDGSIYKYKARFVARGFSQKEGIDYVETFAPAVRYSTIRSLVSLSVAMGWNIHQMDVKTTFLNGTIDEELYI
B8LKV8________________KNDTWDLVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain