SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160115

Length: 489 nt

UniGene Fasta

>sp_v3.0_unigene160115
CCTAATTGGAGTTTACCATTTCATATTTTTACCGATGCATCTGACACTGCAGTAGGTGCATCGCTAGGCCAAAAAGAGGAATCTTGTACTTATGCCATTTATTTTATTAGTAAAAATCTAACACCTGCAGAGCTAAACTATACAGTTACAGAAAAGGAAACACTTGCCATCATTTATGCTGTGAATAAATTCCGACACTACATAACTGGTTATGAAGTCTTTGTACATACTGATCATTCAGCTATTAGACATCTCATGAATAAACCAATAACTAGTGACAGGGTTACCAGATGGTTACTATTGTTACAGGAATTTAACATCACAGTGTTAGATAGACCAGACAAAGAGAACCAGGTCGCTGATTTTCTCTCTAGACTGCAAAACCCAGGTGAGGTTGTTCCAGTTGAAGATTCTTTTCTGGATGAACACTTATTTGCTATTTCCATAGTAACTCCTTGGTATGCTGATCTAGCTAATTACTTGTCTACG

Ace file of the UniGene sp_v3.0_unigene160115

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR	-	-	5.99994e-41	49%
FL-Next	tr=Integrase; subsp. trichocarpa).	-	-	0.0	49%

Source	Gene names
Sma3	19.t00014; 19.t00017; GSVIVT00000833001; GSVIVT00005459001; GSVIVT00009118001; H0211F06-OSIGBa0153M17.7; LOC_Os10g17400; LOC_Os11g22140; LOC_Os11g32200; OSJNAa0053D03.14; OSJNBa0004A10.21; OSJNBa0091C12.6; Os11g0524800; VITISV_000420; VITISV_000510; VITIS

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Viral nucleic acid binding	IPR008891	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Ribosomal protein L33, conserved site	IPR018264	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q0ZCD0

Fln msg: Distance to subject end: 341 aas, your sequence is shorter than subject: 163 - 1139

Fln protein: PNWSLPFHIFTDASDTAVGASLGQKEESCTYAIYFISKNLTPAELNYTVTEKETLAIIYAVNKFRHYITGYEVFVHTDHSAIRHLMNKPITSDRVTRWLLLLQEFNITVLDRPDKENQVADFLSRLQNPGEVVPVEDSFLDEHLFAISIVTPWYADLANYLST

Protein Length: 164

Fln nts: CCTAATTGGAGTTTACCATTTCATATTTTTACCGATGCATCTGACACTGCAGTAGGTGCATCGCTAGGCCAAAAAGAGGAATCTTGTACTTATGCCATTTATTTTATTAGTAAAAATCTAACACCTGCAGAGCTAAACTATACAGTTACAGAAAAGGAAACACTTGCCATCATTTATGCTGTGAATAAATTCCGACACTACATAACTGGTTATGAAGTCTTTGTACATACTGATCATTCAGCTATTAGACATCTCATGAATAAACCAATAACTAGTGACAGGGTTACCAGATGGTTACTATTGTTACAGGAATTTAACATCACAGTGTTAGATAGACCAGACAAAGAGAACCAGGTCGCTGATTTTCTCTCTAGACTGCAAAACCCAGGTGAGGTTGTTCCAGTTGAAGATTCTTTTCTGGATGAACACTTATTTGCTATTTCCATAGTAACTCCTTGGTATGCTGATCTAGCTAATTACTTGTCTACG

Fln Alignment:

HA8LWWM01CP2IP___PNWSLPFHIFTDASDTAVGASLGQKEESCTYAIYFISKNLTPAELNYTVTEKETLAIIYAVNKFRHYITGYEVFVHTDHSAIRHLMNKPITSDRVTRWLLLLQEFNITVLDRPDKENQVADFLSRL--QNPGEVVPVEDSFLDEHLFAISIVTPWYADLANYL
Q0ZCD0________________PDWSLPFEIMCDASDYAVGAVLGQRKDKKPYVIYYASKTLNSAQMNYTTTKKELLAVVFACEKFRSYLVGSPVVVFSDHAALKYLLSKKDSKARLVRWILLLQEFDITIKDKKGTENVVADHLSRLTTDSRSDITPIDDYFPDESLFSVSTM-PWYASIVNFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain