SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160017

Length: 167 nt

UniGene Fasta

>sp_v3.0_unigene160017
CAAATAGTGTCTGGTTATACTCGACAAGGAAATCTGTGACATCTTTTTTCGTCTGCATATGACGCACTTTGCGAAGAAGGAACTGCAACTCCAGTGTGTAAAGCTCTGGATGAAATTGCTGACATCTCAGTGCCAGGAACAAAAGATCATGTTAAGGTGCAGGGAGA

Ace file of the UniGene sp_v3.0_unigene160017

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA ligase isoform 1 [Triticum aestivum]	-	-	6.0e-17	90%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	87%

Source	Gene names
Sma3	AT.I.24-9; At1g07910; GSVIVT00024483001; OSJNBa0049I08.10; Os07g0191700; OsI_25224; OsJ_23409; POPTRDRAFT_256671; RCOM_1399320; RCOM_1399970; VITISV_015154;

Source	GOs	Term	Type	Identity
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	RNA ligase (ATP) activity	GO:0003972	Molecular Function	-
Sma3	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity	GO:0004113	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	polynucleotide 5'-hydroxyl-kinase activity	GO:0051731	Molecular Function	-
Sma3	tRNA splicing, via endonucleolytic cleavage and ligation	GO:0006388	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G07910.1	ATRNL, RNL, AtRLG1 RNAligase chr1:2446712-2454386 FORWARD LENGTH=1104	5.0e-17	77%
RefSeq	Arabidopsis thaliana	NP_001154320.1	RNA ligase [Arabidopsis thaliana]	6.0e-17	77%
RefSeq	Populus trichocarpa	XP_002323444.1	predicted protein, partial [Populus trichocarpa]	4.0e-17	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BVB3

Fln msg: Overlapping hits, possible frame ERROR between 50 and 46, Distance to subject end: 910 aas, your sequence is shorter than subject: 55 - 2186

Fln protein: NSVWLYSTRKSVTSxxxSAYDALCEEGTATPVCKALDEIADISVPGTKDHVKVQG

Protein Length: 56

Fln nts: CAAATAGTGTCTGGTTATACTCGACAAGGAAATCTGTGACATCTxxxxxxxxxTCTGCATATGACGCACTTTGCGAAGAAGGAACTGCAACTCCAGTGTGTAAAGCTCTGGATGAAATTGCTGACATCTCAGTGCCAGGAACAAAAGATCATGTTAAGGTGCAGGGAGA

Fln Alignment:

HA8LWWM01CE4FN___NSVWLYSTRKSVTSxxSAYDALCEEGTATPVCKALDEIADISVPGTKDHVKVQG
A5BVB3________________NHVWLLSTRKSVTSxxAAYDALCEEGTATPVCKALDEVADISVPGSKDHVKVQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain