SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159850

Length: 273 nt

UniGene Fasta

>sp_v3.0_unigene159850
TATATGGTGGTCCACTAGGTCGCCATTCAATCCATGTCATAGAGTACTTCCAGAAATCAGCTTTAGAGCTGCTGAGGAGTGCCTTGAGATAGATTTTGCTGAAATTTATAAGAAGTCTCCTCTTTTCCAGTATCATATAGGGCTAGTTAAAGAATTATCCACACAAGTTCAAGGTGCCACGAATCTTTACTTTCCAACAAAGTTTGCCCAATCTACATGGGCCCAATTTACTGCTTGTCTGTGGAAGAAGCACTGGACATATTGGCGAAGCAC

Ace file of the UniGene sp_v3.0_unigene159850

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter G family member 35 n=2 Tax=Arabidopsis RepID=AB35G_ARATH	-	-	1.0e-20	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Chromosome chr13 scaffold_74, whole genome shotgun sequence	-	-	3.263e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	5.82e-06	-

Source	Gene names
Sma3	At1g15210; At1g59870; At3g16340; F23H11.19; F9L1.15; GSVIVT00034309001; GSVIVT00034319001; GSVIVT00034944001; GSVIVT00034949001; GSVIVT00034958001; MYA6.14; PDR1; PDR7; PDR8; POPTRDRAFT_705805; POPTRDRAFT_830700; RCOM_1489990; RCOM_1490210; T02O04.17; VIT

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15210.1	PDR7, ATPDR7 pleiotropic drug resistance 7 chr1:5231552-5236573 REVERSE LENGTH=1442	4.0e-23	57%
RefSeq	Arabidopsis thaliana	NP_172973.1	ABC transporter G family member 35 [Arabidopsis thaliana]	5.0e-23	57%
RefSeq	Populus trichocarpa	XP_002298240.1	ABC transporter family, pleiotropic drug resistance protein [Populus trichocarpa]	1.0e-22	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Distance to subject end: 260 aas, your sequence is shorter than subject: 90 - 412

Fln protein: IWWSTRSPFNPCHRVLPEISFRAAEECLEIDFAEIYKKSPLFQYHIGLVKELSTQVQGATNLYFPTKFAQSTWAQFTACLWKKHWTYWRS

Protein Length: 91

Fln nts: TATATGGTGGTCCACTAGGTCGCCATTCAATCCATGTCATAGAGTACTTCCAGAAATCAGCTTTAGAGCTGCTGAGGAGTGCCTTGAGATAGATTTTGCTGAAATTTATAAGAAGTCTCCTCTTTTCCAGTATCATATAGGGCTAGTTAAAGAATTATCCACACAAGTTCAAGGTGCCACGAATCTTTACTTTCCAACAAAGTTTGCCCAATCTACATGGGCCCAATTTACTGCTTGTCTGTGGAAGAAGCACTGGACATATTGGCGAAGCAC

Fln Alignment:

HA8LWWM01D83S9___RSPFNPCHRVLPEISFRAAEECLEIDFAEIYKKSPLFQYHIGLVKELSTQVQGATNLYFPTKFAQSTWAQFTACLWKKHWTYWRS
D5ACV1________________RDGYNPATWML-EISSPAAETHLGVDFAEVYSNSPLFQRNQALIKELSTPVPGSRDLYFPTKYSQSFRVQCIACLWKQHWSYWRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain