SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159747

Length: 362 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene159747
GCGCTGCCCATTATAGACTACACCGCTACCTCAAAGCCATGGCCAGTGCCCACAGACTGTCCGATCTGCTTGGCCGAATTTGCGGAAGGNGAAAAAATGAGAGTTCTACCAAAGTGCAATCATGCATTCCACATGGAATGTATCGATAATTGGCTCCGCTCACATTCTTCCTGCCCTATCTGTAGACATTGCCTGAATCTCAAAAGTGGAAACAAGAAGCCGCTAGGCGCTGGAACTGTTCAAGCAACTGTTCAAGCGACCGAATCGAACGACGGCGTCCAATAGTCATGGAGGCCACTGATTTATCTCAAGCAGGTGGAATGGTTTCTCCACACACTGCGACGTTCCAATGAACTCCAACC

Ace file of the UniGene sp_v3.0_unigene159747 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Similarity to RING zinc finger protein n=2 Tax=Arabidopsis RepID=Q9LS98_ARATH	-	-	9.0e-18	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Ring finger protein, putative	-	-	3.886e-12	-

Source	Gene names
Sma3	ATL1P; ATL2A; ATL3; ATL3A; ATL3C; ATL4H; ATL5A; ATL5B; At1g72310; At2g17450; At3g03550; At3g10910; At4g17905; At4g33565/T16L1.1; At5g01880; At5g05280; F5J6.22; GSVIVT00000818001; GSVIVT00011445001; GSVIVT00013627001; GSVIVT00013774001; GSVIVT00015167001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protamine P1	IPR000221	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01880.1	RING/U-box superfamily protein chr5:339017-339496 FORWARD LENGTH=159	5.0e-22	72%
RefSeq	Arabidopsis thaliana	NP_195808.1	RING-H2 finger protein ATL74 [Arabidopsis thaliana]	7.0e-22	72%
RefSeq	Populus trichocarpa	XP_002319337.1	predicted protein, partial [Populus trichocarpa]	8.0e-24	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYQ0

Fln msg: your sequence is shorter than subject: 95 - 222

Fln protein: ALPIIDYTATSKPWPVPTDCPICLAEFAEGEKMRVLPKCNHAFHMECIDNWLRSHSSCPICRHCLNLKSGNKKPLGAGTVQATVQATESNDGVQ*

Protein Length: 96

Fln nts: GCGCTGCCCATTATAGACTACACCGCTACCTCAAAGCCATGGCCAGTGCCCACAGACTGTCCGATCTGCTTGGCCGAATTTGCGGAAGGtGAAAAAATGAGAGTTCTACCAAAGTGCAATCATGCATTCCACATGGAATGTATCGATAATTGGCTCCGCTCACATTCTTCCTGCCCTATCTGTAGACATTGCCTGAATCTCAAAAGTGGAAACAAGAAGCCGCTAGGCGCTGGAACTGTTCAAGCAACTGTTCAAGCGACCGAATCGAACGACGGCGTCCAATAG___TCATGGAGGCCACTGATTTATCTCAAGCAGGTGGAATGGTTTCTCCACACACTGCGACGTTCCAATGAACTCCAACC

Fln Alignment:

HA8LWWM01APZOS___ALPIIDYTATSKPWPVPTDCPICLAEFAEGEKMRVLPKCNHAFHMECIDNWLRSHSSCPICR-HCLNLKSGNKKPLGAGTVQATVQATE
A9NYQ0________________ALPTAVYGAAGSKLPC-TDCPICLAEFLEGDEVRILPKCNHGFHMRCIDTWLASHSSCPTCRQNLLELSRSNKKNNNEGNVNMNTNMSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain