SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159501

Length: 436 nt

UniGene Fasta

>sp_v3.0_unigene159501
GCACGCGGGATGGCGGTCTTGTGTCAGTTGGCACAGATATCACACTGCTCAAGCGGCATCAGGAGCGCCTGCGTGAATCCGAGCGCCGACTGATGGCAACGATCGGCGATCTCTCGTCATCCCAGAAGAAGCTGGAGCGCCAGAAGGCAGAACTGTCCGTCGCCAATGCCAATTATTTGGCCGAGAAGGATCGAGCGGAAGCCGCGAACAAGGCGAAGTCGGAATTTCTTGCGAATATGAGCCATGAGTTGCGCACACCCTTGAACGCGATTCTCGGTTTCTCTGAAATCCTGTTGAACGGCATGTTCGGCCCGGTCGGCTCGCCGAAATACAGCGAATATGCCAAGGACATCCACGAAAGCGGAAAGCATCTGCTGAACGTCATCAACGACATTCTCGACATGTCGAAGATCGAAGCAGGCCACATGAAGATCCA

Ace file of the UniGene sp_v3.0_unigene159501

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Two component sensor kinase n=2 Tax=Agrobacterium RepID=A9CJM5_AGRT5	-	-	0.0	90%
FL-Next	sp=Histidine kinase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G35750.1	AHK2, HK2 histidine kinase 2 chr5:13911743-13916337 REVERSE LENGTH=1176	2.0e-16	45%
RefSeq	Arabidopsis thaliana	NP_568532.1	histidine kinase 2 [Arabidopsis thaliana]	2.0e-16	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5U2

Fln msg: Distance to subject end: 519 aas, your sequence is shorter than subject: 144 - 1176

Fln protein: TRDGGLVSVGTDITLLKRHQERLRESERRLMATIGDLSSSQKKLERQKAELSVANANYLAEKDRAEAANKAKSEFLANMSHELRTPLNAILGFSEILLNGMFGPVGSPKYSEYAKDIHESGKHLLNVINDILDMSKIEAGHMKI

Protein Length: 145

Fln nts: GCACGCGGGATGGCGGTCTTGTGTCAGTTGGCACAGATATCACACTGCTCAAGCGGCATCAGGAGCGCCTGCGTGAATCCGAGCGCCGACTGATGGCAACGATCGGCGATCTCTCGTCATCCCAGAAGAAGCTGGAGCGCCAGAAGGCAGAACTGTCCGTCGCCAATGCCAATTATTTGGCCGAGAAGGATCGAGCGGAAGCCGCGAACAAGGCGAAGTCGGAATTTCTTGCGAATATGAGCCATGAGTTGCGCACACCCTTGAACGCGATTCTCGGTTTCTCTGAAATCCTGTTGAACGGCATGTTCGGCCCGGTCGGCTCGCCGAAATACAGCGAATATGCCAAGGACATCCACGAAAGCGGAAAGCATCTGCTGAACGTCATCAACGACATTCTCGACATGTCGAAGATCGAAGCAGGCCACATGAAGATCCA

Fln Alignment:

HA8LWWM01EASJW___KDRAEAANKAKSEFLANMSHELRTPLNAILGFSEILLNGMFGPVGSPKYSEYAKDIHESGKHLLNVINDILDMSKIEAGHMKI
Q9C5U2________________KARAEAADIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDL----DAKQMDYAQTAHGSGKDLTSLINEVLDQAKIESGRLEL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain