SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159400

Length: 474 nt

UniGene Fasta

>sp_v3.0_unigene159400
TCAAACGCCGTTCTTGGACATCAAAAATGGCAGACACCCGTGCTTGATCAAGACATTTAGTGGCGATTTCATTCCGAATGATCTAGTTATCGGCTCACAGGAAGCCCAAAATAACTGGCAAAAGAACCCGGTGGTGCTAGTGACCGGTCCAAACATGGGCGGTAAGTCTACTTTGATGCGTCAGGCGGGTCTTACTGTCATACTAGCTCAAATCGGCTCGTACGTGCCAGCCGAGTCGTGTCGCCTCACACCAGTCGATCGTATCTTTACTCGTATCGGCGCCACCGACAAGATCCTAGCCGGCGAGAGCACGTTCTATCTAGAACTGAGCGAGACGGCGTCTATTCTTCATCATGCTACTCGTCACAGTCTTGTCCTCATGGACGAGCTTGGCCGAGGCACAGCCACTTTTGATGGAACCAGCATCGCTTACAGTGTTGTCAAAGAGCTAGCACAGAATATTCAATGCCGTAG

Ace file of the UniGene sp_v3.0_unigene159400

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: DNA mismatch repair protein Msh6-like n=1 Tax=Anolis carolinensis RepID=UPI000203838B	-	-	0.0	70%
FL-Next	sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	MutS homolog 7	-	-	5.347e-08	-

Source	Gene names
Sma3	AGAA.3; At3g18524; At3g24495; At4g02070; At4g17380; CHLREDRAFT_120228; GSVIVT00005281001; GSVIVT00009202001; GSVIVT00012228001; GSVIVT00016763001; GSVIVT00028101001; H0124B04.17; MICPUCDRAFT_18167; MICPUCDRAFT_40215; MICPUN_62040; MICPUN_80006; MICPUN_887

Source	GOs	Term	Type	Identity
Sma3	condensed nuclear chromosome	GO:0000794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	MutSalpha complex	GO:0032301	Cellular Component	-
Sma3	MutSbeta complex	GO:0032302	Cellular Component	-
Sma3	damaged DNA binding	GO:0003684	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	mismatch repair	GO:0006298	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	meiotic prophase I	GO:0007128	Biological Process	-
Sma3	synapsis	GO:0007129	Biological Process	-
Sma3	negative regulation of reciprocal meiotic recombination	GO:0045128	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA mismatch repair protein MutS, C-terminal	IPR000432	-	-
Sma3	Tudor domain	IPR002999	-	-
Sma3	Regulator of K+ conductance, N-terminal	IPR003148	-	-
Sma3	K+/H+ exchanger	IPR004771	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	DNA mismatch repair protein MutS-like, N-terminal	IPR007695	-	-
Sma3	DNA mismatch repair protein MutS, core	IPR007696	-	-
Sma3	DNA mismatch repair protein MutS, connector	IPR007860	-	-
Sma3	DNA mismatch repair protein MutS, clamp	IPR007861	-	-
Sma3	DNA mismatch repair protein, MSH2	IPR011184	-	-
Sma3	DNA mismatch repair protein MutS-homologue MSH6	IPR015536	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DNA mismatch repair protein MutS, N-terminal	IPR016151	-	-
Sma3	DNA mismatch repair protein Msh6	IPR017261	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G24495.1	MSH7, MSH6-2, ATMSH7 MUTS homolog 7 chr3:8912418-8918086 REVERSE LENGTH=1109	0.0	51%
RefSeq	Arabidopsis thaliana	NP_850630.1	DNA mismatch repair protein Msh6-2 [Arabidopsis thaliana]	0.0	51%
RefSeq	Populus trichocarpa	XP_002331157.1	predicted protein [Populus trichocarpa]	1.96182e-44	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SMV7

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 157 - 1109

Fln protein: QTPFLDIKNGRHPCLIKTFSGDFIPNDLVIGSQEAQNNWQKNPVVLVTGPNMGGKSTLMRQAGLTVILAQIGSYVPAESCRLTPVDRIFTRIGATDKILAGESTFYLELSETASILHHATRHSLVLMDELGRGTATFDGTSIAYSVVKELAQNIQCR

Protein Length: 158

Fln nts: TCAAACGCCGTTCTTGGACATCAAAAATGGCAGACACCCGTGCTTGATCAAGACATTTAGTGGCGATTTCATTCCGAATGATCTAGTTATCGGCTCACAGGAAGCCCAAAATAACTGGCAAAAGAACCCGGTGGTGCTAGTGACCGGTCCAAACATGGGCGGTAAGTCTACTTTGATGCGTCAGGCGGGTCTTACTGTCATACTAGCTCAAATCGGCTCGTACGTGCCAGCCGAGTCGTGTCGCCTCACACCAGTCGATCGTATCTTTACTCGTATCGGCGCCACCGACAAGATCCTAGCCGGCGAGAGCACGTTCTATCTAGAACTGAGCGAGACGGCGTCTATTCTTCATCATGCTACTCGTCACAGTCTTGTCCTCATGGACGAGCTTGGCCGAGGCACAGCCACTTTTGATGGAACCAGCATCGCTTACAGTGTTGTCAAAGAGCTAGCACAGAATATTCAATGCCGTAG

Fln Alignment:

HLKU4M004IS56V___PFLDIKNGRHPCLIKTFSGDFIPNDLVIGSQEAQNNWQKNPVVLVTGPNMGGKSTLMRQAGLTVILAQIGSYVPAESCRLTPVDRIFTRIGATDKILAGESTFYLELSETASILHHATRHSLVLMDELGRGTATFDGTSIAYSVVKELAQNIQCR
Q9SMV7________________PILKIQGLWHPFAVAADGQLPVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain