SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159389

Length: 182 nt

UniGene Fasta

>sp_v3.0_unigene159389
GAACAGAATAAGATGTTGGGAATACCGTCAATTACCAACTTTGGTTCGTGTAAACCAACCAACTCGTCCTGATAAAGCAAGAAGATTAGGATATAAAGCAAAACAAGGATATGTTATTTTTAGAGTAAGAATAAGAAGAGGAGGAAGAAAGAGAAAATTGCACAATGGTATTGCTCACGGAA

Ace file of the UniGene sp_v3.0_unigene159389

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L15 n=17 Tax=Magnoliophyta RepID=RL15_PETHY	-	-	2.0e-12	57%
FL-Next	sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Ribosomal protein L15	-	-	0.0	-

Source	Gene names
Sma3	40.t00012; At4g16720; At4g17390; BiRP2; CHLREDRAFT_76376; FCAALL.416; GSVIVT00005278001; GSVIVT00012225001; GSVIVT00019176001; GSVIVT00030872001; LOC_Os03g40180; MICPUCDRAFT_31849; MICPUN_55312; OJ1523_A02.2; OSJNBa0018H09.6; OSJNBa0087M10.1; OSTLU_14085;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L15e	IPR000439	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G16720.1	Ribosomal protein L23/L15e family protein chr4:9400156-9401315 REVERSE LENGTH=204	6.0e-16	71%
RefSeq	Arabidopsis thaliana	NP_193470.1	60S ribosomal protein L15-2 [Arabidopsis thaliana]	7.0e-16	71%
RefSeq	Populus trichocarpa	XP_002334856.1	predicted protein, partial [Populus trichocarpa]	3.0e-17	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ28

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 60 - 204

Fln protein: NRIRCWEYRQLPTLVRVNQPTRPDKARRLGYKAKQGYVIFRVRIRRGGRKRKLHNGIAHG

Protein Length: 61

Fln nts: GAACAGAATAAGATGTTGGGAATACCGTCAATTACCAACTTTGGTTCGTGTAAACCAACCAACTCGTCCTGATAAAGCAAGAAGATTAGGATATAAAGCAAAACAAGGATATGTTATTTTTAGAGTAAGAATAAGAAGAGGAGGAAGAAAGAGAAAATTGCACAATGGTATTGCTCACGGAA

Fln Alignment:

HLKU4M004JU4HN___RIRCWEYRQLPTLVRVNQPTRPDKARRLGYKAKQGYXXXXXXXXXXXXXXXLHNGIAHG
A9NZ28________________RVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain