SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159339

Length: 302 nt

UniGene Fasta

>sp_v3.0_unigene159339
CCGCTGATCGCGATTTAAGGAGGAAGGATCATGATCGTCTCAAGAGTTGCCCTAGGTCGAGCTGTACCGCGCGGAACATGCCCACAAGCTCCGGCGCATGGCACCTTTGTGAGCAGGCCCAAGGCTGCTCCAGCCGTCAGGCGGATCAATGGTTCCACAAGAATGGCGGCTATTCCTCTGGTGGGAAGTGAAGCTCCAGACTTCATAGCAGAAGCAGTCTTTGATCAGGAGTTTCAAACTTTGTCTTTATCGCAGTACAGGGGAAAGTACGTCATCCTAAAGTTCTTTCCGCTTGCCTTCAC

Ace file of the UniGene sp_v3.0_unigene159339

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0450 Peroxiredoxin	-	-	1.0e-09	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	2-cys peroxiredoxin-like protein	-	-	7.91e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxiredoxin.	EC:1.11.1.15	-	9.094e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		9.094e-12	%
Sma3	Metabolic pathways	01100		9.094e-12	%

Source	Gene names
Sma3	At3g11630; At5g06290; BAS1; CHLREDRAFT_142363; F24K9.28; GSVIVT00021525001; MHF15.19; MICPUN_109516; OSTLU_12848; OSTLU_13536; POPTRDRAFT_576525; POPTRDRAFT_832036; PRX1; PtrcPrx2-cysA; PtrcPrx2cysB; RCOM_0225410; T19F11.3; TPx1; TSA; VITISV_025619; bas1;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	antioxidant activity	GO:0016209	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	peroxiredoxin activity	GO:0051920	Molecular Function	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3		IPR012335	-	-
Sma3		IPR017936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G06290.1	2-Cys Prx B, 2CPB 2-cysteine peroxiredoxin B chr5:1919380-1921211 FORWARD LENGTH=273	2.0e-11	68%
RefSeq	Arabidopsis thaliana	NP_568166.1	2-Cys peroxiredoxin BAS1-like protein [Arabidopsis thaliana]	3.0e-11	68%
RefSeq	Populus trichocarpa	XP_002309395.1	2-cys peroxiredoxin [Populus trichocarpa]	9.0e-11	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRA2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 150 aas, your sequence is shorter than subject: 100 - 282

Fln protein: PLIAI*GGRIMIVSRVALGRAVPRGTCPQAPAHGTFVSRPKAAPAVRRINGSTRMAAIPLVGSEAPDFIAEAVFDQEFQTLSLSQYRGKYVILKFFPLAF

Protein Length: 101

Fln nts: CCGCTGATCGCGATTTAAGGAGGAAGGATCATGATCGTCTCAAGAGTTGCCCTAGGTCGAGCTGTACCGCGCGGAACATGCCCACAAGCTCCGGCGCATGGCACCTTTGTGAGCAGGCCCAAGGCTGCTCCAGCCGTCAGGCGGATCAATGGTTCCACAAGAATGGCGGCTATTCCTCTGGTGGGAAGTGAAGCTCCAGACTTCATAGCAGAAGCAGTCTTTGATCAGGAGTTTCAAACTTTGTCTTTATCGCAGTACAGGGGAAAGTACGTCATCCTAAAGTTCTTTCCGCTTGCCTTCAC

Fln Alignment:

HLKU4M004IO6CI___IPLVGSEAPDFIAEAVFDQEFQTLSLSQYRG-KYVILKFFPLAF
A9NRA2________________LPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain