SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159299

Length: 370 nt

UniGene Fasta

>sp_v3.0_unigene159299
TGCCTGAAAGCTCATCCGTCGAGCATTAGTCAACATGAAGCTTCTCCCCGTCCTGAATTTCGTTGCCGCGGCTCTTGCAGCCAGCAGAACATCTGCCCCAAGCGGATGTCTCGTTGTCCGCAAGTCTCCCTCAAGCGGCCAATACGGCACCGTCCAAGCCGCCGTCAACGCGCTATCTACCTCGTCGACCTCTAGCCAATGCATCTTCATCGACCAGGGTACATACACGGAGCAGGTCCTCGTTCCCACCCGCAAAGCTCAGCTGTCCATCTACGGATACACCACCGACACCACCGGCTACGCTCAGAACAAGGTCACCATCACGGGCAAGAAGAGCCAGGCCGACGGCTCCAACAACGACGAGAGTGCG

Ace file of the UniGene sp_v3.0_unigene159299

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7ZFZ7_NECH7	-	-	5.0e-37	70%
FL-Next	sp=Pectinesterase; Vitis riparia (Frost grape) (Vitis vulpina).	-	-	0.0	62%

Source	Gene names
Sma3	PME;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: Q9SW71

Fln msg: Distance to subject end: 217 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 112 - 336

Fln protein: MKLLPVLNFVAAALAASRTSAPSGCLVVRKSPSSGQYGTVQAAVNALSTSSTSSQCIFIDQGTYTEQVLVPTRKAQLSIYGYTTDTTGYAQNKVTITGKKSQADGSNNDESA

Protein Length: 113

Fln nts: TGCCTGAAAGCTCATCCGTCGAGCATTAGTCAAC_-_ATGAAGCTTCTCCCCGTCCTGAATTTCGTTGCCGCGGCTCTTGCAGCCAGCAGAACATCTGCCCCAAGCGGATGTCTCGTTGTCCGCAAGTCTCCCTCAAGCGGCCAATACGGCACCGTCCAAGCCGCCGTCAACGCGCTATCTACCTCGTCGACCTCTAGCCAATGCATCTTCATCGACCAGGGTACATACACGGAGCAGGTCCTCGTTCCCACCCGCAAAGCTCAGCTGTCCATCTACGGATACACCACCGACACCACCGGCTACGCTCAGAACAAGGTCACCATCACGGGCAAGAAGAGCCAGGCCGACGGCTCCAACAACGACGAGAGTGCG

Fln Alignment:

HLKU4M004I9292___GCLVVRKSPSSGQYGTVQAAVNALSTSSTSSQCIFIDQGTYTEQVLVPTRKAQLSIYGYTTDTTGYAQNKVTITGKKSQADGSNNDESA
Q9SW71________________GCLSVG---SSGTYKTVSAAVAKLSTSSTTAQCIFIYKGTYKEQVYVPALKSALTIYGETTDTSGFASNTVTITQGKSQDDVSGNDLTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain