SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159295

Length: 326 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene159295
CCAGCAGATCGCCACGTGCGAGTACGGTCTGGTGGCCAAGACAAAGCGTGTCATTATGGAGCGCAACACTTACCCGCGCCGATGGGGTTTGGGACCCAAAGCCCTGGAAAAGAAGAAGCTGGTCACGCAAGGCAAGCTGGACAAGTACGGCAAGGCCAACGACCAGACGCCCGACTCTTGGAAGTCTTCGTATGTGGATCTGAGCGGAAAGGTGGAGATTCCTGCAGGAAAGGCGCAGTCCGATGCGGATGTGACCACTTTGTCGTCTACGACGAATGGTGGCGTCGCTCCCATGGAGGAGGATAAGGAAGACTCGGAGCCCAGCG

Ace file of the UniGene sp_v3.0_unigene159295 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	H/ACA ribonucleoprotein complex subunit 4 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CI46_9EUKA	-	-	2.0e-23	47%
FL-Next	sp=H/ACA ribonucleoprotein complex subunit 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%

Source	Gene names
Sma3	CBF5; CHLREDRAFT_99415; LOC_Os03g25450; OSJNBa0013M12.22; Os03g0370500; OsI_11747; OsI_11751; OsJ_11000; POPTRDRAFT_255463; POPTRDRAFT_865471; RCOM_0344550;

Source	GOs	Term	Type	Identity
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Pseudouridine synthase II	IPR002501	-	-
Sma3	Uncharacterised domain CHP00451	IPR004521	-	-
Sma3	Pseudouridine synthase-related	IPR004802	-	-
Sma3	Dyskerin-like	IPR012960	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002323264.1	predicted protein, partial [Populus trichocarpa]	1.0e-25	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LD90

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 108 - 565

Fln protein: QQIATCEYGLVAKTKRVIMERNTYPRRWGLGPKALEKKKLVTQGKLDKYGKANDQTPDSWKSSYVDLSGKVEIPAGKAQSDADVTTLSSTTNGGVAPMEEDKEDSEPS

Protein Length: 109

Fln nts: CCAGCAGATCGCCACGTGCGAGTACGGTCTGGTGGCCAAGACAAAGCGTGTCATTATGGAGCGCAACACTTACCCGCGCCGATGGGGTTTGGGACCCAAAGCCCTGGAAAAGAAGAAGCTGGTCACGCAAGGCAAGCTGGACAAGTACGGCAAGGCCAACGACCAGACGCCCGACTCTTGGAAGTCTTCGTATGTGGATCTGAGCGGAAAGGTGGAGATTCCTGCAGGAAAGGCGCAGTCCGATGCGGATGTGACCACTTTGTCGTCTACGACGAATGGTGGCGTCGCTCCCATGGAGGAGGATAAGGAAGACTCGGAGCCCAGCG

Fln Alignment:

HLKU4M004JSYXH___IATCEYGLVAKTKRVIMERNTYPRRWGLGPKALEKKKLVTQGKLDKYGKANDQTPDSWKSSYVDLSGKVEIPAGKAQSDADVTTLSSTTNGGVAPMEEDKEDSE
Q9LD90________________MATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEARKRKHDDSSD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain