SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159269

Length: 371 nt

UniGene Fasta

>sp_v3.0_unigene159269
CGCACATCACCCTCGAGGCCGCGCTTCAGACTCATCCCAACGTTGCCCTTATTGGAGAGGAGGTTGCGGAAAAGGGCCAAACGCTGGAGCAAATCACTAGAGAACTTGCTGACGTCATTTGTACTCGTGCAAACGACGGCAAGAACTTTGGTATCATCCTTGTACCCGAAGGATTGATCGAATTCATTCCTGAGGTTGGCACATTGATTTCTGAATTGAATGAATTGCTTGCAGCCAATGTTGCCACAACGACATCCCCGCAAAGCTCACCGAGGCATCGAGGAGGCTGTTCGAATTCCTGCCTCACGATATCAGACAGCAGCTGCTTCTCGATCGCGATCCTCATGGCAACGTGCAGGTCTCGAAGATCG

Ace file of the UniGene sp_v3.0_unigene159269

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pyrophosphate-dependent phosphofructokinase beta subunit [Citrus x paradisi]	-	-	3.0e-33	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta	-	-	8.893e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.1.9-	-	1.842e-13	-

Source	Gene names
Sma3	AT4g04040; At1g12000; At1g12000/F12F1.13; F12F1.13; GSVIVT00025935001; MtrDRAFT_AC150441g20v1; OJ1136_C11.21; Os06g0247500; OsI_22368; OsJ_20808; PFP; PFP-BETA; PFPbeta; PHYPADRAFT_188815; PHYPADRAFT_218794; POPTRDRAFT_1093153; POPTRDRAFT_828526; PPi-PFKb

Source	GOs	Term	Type	Identity
Sma3	6-phosphofructokinase complex	GO:0005945	Cellular Component	-
Sma3	6-phosphofructokinase activity	GO:0003872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	diphosphate-fructose-6-phosphate 1-phosphotransferase activity	GO:0047334	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Pyrophosphate-dependent phosphofructokinase PfpB	IPR011183	-	-
Sma3	Pyrophosphate-dependent phosphofructokinase, alpha-helical	IPR013981	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12000.1	Phosphofructokinase family protein chr1:4050159-4053727 REVERSE LENGTH=566	3.0e-34	63%
RefSeq	Arabidopsis thaliana	NP_172664.1	pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Arabidopsis thaliana]	4.0e-34	63%
RefSeq	Populus trichocarpa	XP_002331563.1	predicted protein [Populus trichocarpa]	4.0e-34	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPY8

Fln msg: Separated hits, possible frame ERROR between 245 and 251, Distance to subject end: 222 aas, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning, your sequence is shorter than subject: 123 - 351

Fln protein: HITLEAALQTHPNVALIGEEVAEKGQTLEQITRELADVICTRANDGKNFGIILVPEGLIEFIPEVGTLISELNELLAANVxxxDIPAKLTEASRRLFEFLPHDIRQQLLLDRDPHGNVQVSKI

Protein Length: 124

Fln nts: CGCACATCACCCTCGAGGCCGCGCTTCAGACTCATCCCAACGTTGCCCTTATTGGAGAGGAGGTTGCGGAAAAGGGCCAAACGCTGGAGCAAATCACTAGAGAACTTGCTGACGTCATTTGTACTCGTGCAAACGACGGCAAGAACTTTGGTATCATCCTTGTACCCGAAGGATTGATCGAATTCATTCCTGAGGTTGGCACATTGATTTCTGAATTGAATGAATTGCTTGCAGCCAATGTTGCxxxxxxCGACATCCCCGCAAAGCTCACCGAGGCATCGAGGAGGCTGTTCGAATTCCTGCCTCACGATATCAGACAGCAGCTGCTTCTCGATCGCGATCCTCATGGCAACGTGCAGGTCTCGAAGATCG

Fln Alignment:

HLKU4M004ISWVA___HITLEAALQTHPNVALIGEEVAEKGQTLEQITRELADVICTRANDGKNFGIILVPEGLIEFIPEVGTLISELNELLAANVAxxDIPAKLTEASRRLFEFLPHDIRQQLLLDRDPHGNVQVSKI
B8LPY8________________HVALECTLQSHPNMVILGEEVATSKMTLFDLTTQICDAVQARAEQDKYHGVILLPEGLIENIPEVYALLQEIHVLHAQGVSxxDISSRLSPWASALFEFLPPFIRKQLLLHPESDDSAQLSQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain