SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159265

Length: 311 nt

UniGene Fasta

>sp_v3.0_unigene159265
ATTACTACTTCGGTAGAGAAGATCAGACAAGCGAAGCACTTTGTGCTGGTGGTAGTTAAAGACTGCCAAGATGGGCTTGACTTTCACCAAATTGTTTGCCAGGCTCTTCAGCAAGAGGGAGATGCGAATTCTCATGGTCGGGTTGGACGCAGCTGGTAAGACCACAATTCTGTACAAGCTGAAGCTGGGAGAGATCGTGACAACCATCCCCACAATTGGCTTCAACGTGGAGACTGTAGAGTACAAGAACATTAGCTTCACAGTGTGGGATGTGGGTGGTCAAGACAAGATCCGTCCTCTGTGGAGGCATT

Ace file of the UniGene sp_v3.0_unigene159265

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor [Oryza sativa Japonica Group]	-	-	2.0e-38	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	ADP-ribosylation factor	-	-	7.458e-27	-

Source	Gene names
Sma3	24.t00012; ARF; ARF1; ARF2-A; ARF2-B; ARF3; ARFA1-A; ARFA1-D; ARFA1A; ARFA1B; ARFA2-A; ARFA2-B; ARL1; ARL5; Arf; Arf1; ArfA11; ArfA12; ArfA13; ArfA14; ArfA15; ArfB1A1; ArfB1B1; ArfB1B2; ArfB21; ArfB22; ArfB23; Arl15L; Arl1A1; Arl1A2; Arl5A1; Arl5A2; At1g1

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phosphatidylinositol 3-kinase complex	GO:0005942	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	1-phosphatidylinositol-3-kinase activity	GO:0016303	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-
Sma3	phosphatidylinositol phosphorylation	GO:0046854	Biological Process	-
Sma3	phosphatidylinositol-mediated signaling	GO:0048015	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Phosphoinositide 3-kinase, C2	IPR002420	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Phosphatidylinositol Kinase	IPR015433	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G14670.1	ATARFA1B, ARFA1B ADP-ribosylation factor A1B chr5:4729319-4730495 FORWARD LENGTH=188	95%
RefSeq	Arabidopsis thaliana	NP_196971.1	ADP-ribosylation factor A1B [Arabidopsis thaliana]	95%
RefSeq	Populus trichocarpa	XP_002320274.1	predicted protein [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPL2

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 80 - 181

Fln protein: MGLTFTKLFARLFSKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH

Protein Length: 81

Fln nts: ATTACTACTTCGGTAGAGAAGATCAGACAAGCGAAGCACTTTGTGCTGGTGGTAGTTAAAGACTGCCAAG_-_ATGGGCTTGACTTTCACCAAATTGTTTGCCAGGCTCTTCAGCAAGAGGGAGATGCGAATTCTCATGGTCGGGTTGGACGCAGCTGGTAAGACCACAATTCTGTACAAGCTGAAGCTGGGAGAGATCGTGACAACCATCCCCACAATTGGCTTCAACGTGGAGACTGTAGAGTACAAGAACATTAGCTTCACAGTGTGGGATGTGGGTGGTCAAGACAAGATCCGTCCTCTGTGGAGGCATT

Fln Alignment:

HLKU4M004IG5J4___MGLTFTKLFARLFSKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH
C0PPL2________________MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain