SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159256

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene159256
ATAGCAAAGCAAGAGGTTTCTGAAAATGGATCAAGCGGCGGCGGCTGTGGATTGTCCTCAACCGCACAAGCTTAAAAGGCCTCTACGGTGCATTGTTAAACTTGGTGGTGCAGCAATCACTAGGAAAGATGAACTTGAGACCATTAATGAGAAAAATCTTTCTTCAGTTACTTATCAGCTAAGGCAAGCAATGATGAGTCATTCTACAGTAATACAAACGATGGACTGGAGCAAGAGAGTTGGAAC

Ace file of the UniGene sp_v3.0_unigene159256

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	amino acid kinase-like protein [Arabidopsis thaliana] gb\|AAN12957.1\| unknown protein [Arabidopsis thaliana] gb\|AEE30713.1\| amino acid kinase-like protein [Arabidopsis thaliana]	-	-	2.0e-09	60%
FL-Next	tr=Glutamate 5-kinase; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	62%

Source	Gene names
Sma3	At1g26640; Os01g0764600; OsI_03853; OsJ_03563; P0403C05.12-1; POPTRDRAFT_659252;

Source	GOs	Term	Type	e value	Identity
Sma3	cellular amino acid biosynthetic process	GO:0008652	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G26640.1	Amino acid kinase family protein chr1:9207620-9209766 REVERSE LENGTH=332	1.0e-13	60%
RefSeq	Arabidopsis thaliana	NP_173986.2	amino acid kinase-like protein [Arabidopsis thaliana]	2.0e-13	60%
RefSeq	Populus trichocarpa	XP_002316105.1	predicted protein [Populus trichocarpa]	3.0e-15	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: G7JWN2

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 73 - 218

Fln protein: MDQAAAAVDCPQPHKLKRPLRCIVKLGGAAITRKDELETINEKNLSSVTYQLRQAMMSHSTVIQTMDWSKRVG

Protein Length: 74

Fln nts: ATAGCAAAGCAAGAGGTTTCTGAAA_-_ATGGATCAAGCGGCGGCGGCTGTGGATTGTCCTCAACCGCACAAGCTTAAAAGGCCTCTACGGTGCATTGTTAAACTTGGTGGTGCAGCAATCACTAGGAAAGATGAACTTGAGACCATTAATGAGAAAAATCTTTCTTCAGTTACTTATCAGCTAAGGCAAGCAATGATGAGTCATTCTACAGTAATACAAACGATGGACTGGAGCAAGAGAGTTGGAAC

Fln Alignment:

HLKU4M004I44TV___RPLRCIVKLGGAAITRKDELETINEKNLSSVTYQLRQAMMSHSTVIQTMDWSKRVG
G7JWN2________________QPIRCIVKLGGAAITCKNELEKINDEILHKVSEQLRQAMIASSQKPPGMDWSKRPG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain