SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159249

Length: 320 nt

UniGene Fasta

>sp_v3.0_unigene159249
TTATTGAGACACGAAATAACCAGAAAGAATTACAAGAATTCTGACCAGTATTTGCTCGCGAAATACTCTGTTGGTGGACACAATGTTCCATTGACTGATTACGAAGATGCTCAATATTATGGACCGATCACTCTTGGTACTCCTGGTCAAGAATTTTCAGTGGTTTTCGACACTGGTTCTTCTAATTTATGGATACCATCTAAGAAATGTACCGCGATTTCGTGCTTAACTCACCACCGATACGATTCCTCAAAATCTTCAACTTATAAGGCCAATGGAACTGAATTCTCTATTACTTACGGTAGTGGTTCTGTTGCCGG

Ace file of the UniGene sp_v3.0_unigene159249

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cathepsin D n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2TYL4_9EUKA	-	-	4.0e-30	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Aspartic proteinase	-	-	1.187e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	5.855e-08	-
Sma3		EC:3.4.23.4-	-	3.598e-20	-

Source	Gene names
Sma3	ASP1; AT1G62290; AT4g04460; At1g11910; At1g62290; At4g04460; CHLREDRAFT_128744; F12F1.24; F19K23.21; GSVIVT00006870001; GSVIVT00019733001; GSVIVT00022513001; GSVIVT00022516001; GSVIVT00027288001; LOC_Os05g04630; LOC_Os05g49200; MICPUCDRAFT_51434; MICPUN_1

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62290.1	Saposin-like aspartyl protease family protein chr1:23010107-23012681 REVERSE LENGTH=513	6.0e-27	60%
RefSeq	Arabidopsis thaliana	NP_176419.2	phytepsin [Arabidopsis thaliana]	8.0e-27	60%
RefSeq	Populus trichocarpa	XP_002331542.1	predicted protein [Populus trichocarpa]	4.0e-26	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRP2

Fln msg: Distance to subject end: 316 aas, your sequence is shorter than subject: 106 - 471

Fln protein: LLRHEITRKNYKNSDQYLLAKYSVGGHNVPLTDYEDAQYYGPITLGTPGQEFSVVFDTGSSNLWIPSKKCTAISCLTHHRYDSSKSSTYKANGTEFSITYGSGSVA

Protein Length: 107

Fln nts: TTATTGAGACACGAAATAACCAGAAAGAATTACAAGAATTCTGACCAGTATTTGCTCGCGAAATACTCTGTTGGTGGACACAATGTTCCATTGACTGATTACGAAGATGCTCAATATTATGGACCGATCACTCTTGGTACTCCTGGTCAAGAATTTTCAGTGGTTTTCGACACTGGTTCTTCTAATTTATGGATACCATCTAAGAAATGTACCGCGATTTCGTGCTTAACTCACCACCGATACGATTCCTCAAAATCTTCAACTTATAAGGCCAATGGAACTGAATTCTCTATTACTTACGGTAGTGGTTCTGTTGCCGG

Fln Alignment:

HLKU4M004IOB0T___SVGGHNVPLTDYEDAQYYGPITLGTPGQEFSVVFDTGSSNLWIPSKKC-TAISCLTHHRYDSSKSSTYKANGTEFSITYGSGSVA
B8LRP2________________SARGEYVPLKNYLDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSTKCYLSIACYFHSKYKASQSSSYCVNGKPFNIQYGSGSVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain