SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159229

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene159229
AACTTCGCACACAGCGGCAGCCACCGCCACAGTCACAGCCATGAGCGGCGCCAGCTACTTGCTCACCACATTTAGCCCCTCGGGCAAACTCGTACAGATCGAGTATGCGCTCAACGCCGTTGGTGCGGGCAAAACGTCGCTGGGCATCAAAGCCAGCAATGGTGTAGTCATCGCAACGGAGAAGAAAATGCCTTCTATTTTGATTGATGAAAGATCCGTAGAG

Ace file of the UniGene sp_v3.0_unigene159229

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RC85_PHYPA	-	-	4.0e-18	85%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Proteasome subunit alpha type	-	-	6.335e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	9.843e-15	-

Source	Gene names
Sma3	AT1G16470; At1g16470; At1g79210; CHLREDRAFT_194387; GSVIVT00030187001; MA4_54B05.2; MICPUCDRAFT_49610; MICPUN_56599; OJ1626_B09.4; OSTLU_41065; Os02g0634900; OsI_08192; OsI_29423; OsJ_07639; OsJ_11088; Ot06g00230; PAB1; PAB2; PHATRDRAFT_49897; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	endopeptidase activity	GO:0004175	Molecular Function	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16470.1	PAB1 proteasome subunit PAB1 chr1:5623122-5625439 FORWARD LENGTH=235	2.0e-24	82%
RefSeq	Arabidopsis thaliana	NP_001031057.1	proteasome subunit alpha type-2-A [Arabidopsis thaliana]	3.0e-24	82%
RefSeq	Populus trichocarpa	XP_002318905.1	predicted protein [Populus trichocarpa]	4.0e-24	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLK4

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 61 - 235

Fln protein: MSGASYLLTTFSPSGKLVQIEYALNAVGAGKTSLGIKASNGVVIATEKKMPSILIDERSVE

Protein Length: 62

Fln nts: AACTTCGCACACAGCGGCAGCCACCGCCACAGTCACAGCC_-_ATGAGCGGCGCCAGCTACTTGCTCACCACATTTAGCCCCTCGGGCAAACTCGTACAGATCGAGTATGCGCTCAACGCCGTTGGTGCGGGCAAAACGTCGCTGGGCATCAAAGCCAGCAATGGTGTAGTCATCGCAACGGAGAAGAAAATGCCTTCTATTTTGATTGATGAAAGATCCGTAGAG

Fln Alignment:

HLKU4M004ISB8Y___YLLTTFSPSGKLVQIEYALNAVGAGKTSLGIKASNGVVIATEKKMPSILIDERSVE
A9NLK4________________FSLTTFSPSGKLVQIEHALMAVGSGQTSLGIKAANGVVIATEKKLPSILVDESSVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain