SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159185

Length: 264 nt

UniGene Fasta

>sp_v3.0_unigene159185
CTTATTACAACTTACCAAGAGATTTTTATTCTACCACCATGCCACAACCAAAAAAAGTCGCCGGAAAAAAACAAGCTGAGACAATCAATCAACGTCTCCAACTTGTTATGAAATCTGGTAAATATGTTCTTGGCTATCGTCAAACATTAAAGGCACTCCGAAATGGACAAGCTAAATTAATTCTTGTCTCAGCTAATACACCACAAATTCGAAAAAGTGAAATCGAATATTATGCTATGTTAGGTAAAACTGGTGTACATCATT

Ace file of the UniGene sp_v3.0_unigene159185

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to ribosomal protein L30 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000583DDC	-	-	1.0e-22	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	60S ribosomal protein L30	-	-	8.348e-18	-

Source	Gene names
Sma3	At1g36240; At1g77940; At3g18740; CHLREDRAFT_166012; F15C21.6; GSVIVT00015281001; GSVIVT00019431001; GSVIVT00028795001; MICPUCDRAFT_49144; MICPUN_94345; MVE11.10; OJ1119_H02.22; OSJNBa0088I06.1; OSTLU_37627; Os01g0276000; Os01g0812800; Os05g0490100; OsI_01

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L30e	IPR000231	-	0.0	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein chr1:13614890-13616233 FORWARD LENGTH=112	3.0e-25	66%
RefSeq	Arabidopsis thaliana	NP_174853.1	large subunit ribosomal protein L30e [Arabidopsis thaliana]	3.0e-25	66%
RefSeq	Populus trichocarpa	XP_002313617.1	predicted protein [Populus trichocarpa]	8.0e-26	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLC4

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 75 - 110

Fln protein: MPQPKKVAGKKQAETINQRLQLVMKSGKYVLGYRQTLKALRNGQAKLILVSANTPQIRKSEIEYYAMLGKTGVHH

Protein Length: 76

Fln nts: CTTATTACAACTTACCAAGAGATTTTTATTCTACCACC_-_ATGCCACAACCAAAAAAAGTCGCCGGAAAAAAACAAGCTGAGACAATCAATCAACGTCTCCAACTTGTTATGAAATCTGGTAAATATGTTCTTGGCTATCGTCAAACATTAAAGGCACTCCGAAATGGACAAGCTAAATTAATTCTTGTCTCAGCTAATACACCACAAATTCGAAAAAGTGAAATCGAATATTATGCTATGTTAGGTAAAACTGGTGTACATCATT

Fln Alignment:

HLKU4M004J0PGP___KKQAETINQRLQLVMKSGKYVLGYRQTLKALRNGQAKLILVSANTPQIRKSEIEYYAMLGKTGVHH
A9NLC4________________KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIIISNNCPPLQRSEIEYYAMLAKVGVHH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain