SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159171

Length: 321 nt

UniGene Fasta

>sp_v3.0_unigene159171
AGAACAGGCCTGATACCGCATCTCGCGTTTCGAAGACCCACTCATTGCCCATATCAAGGTCTACCCTCCCGGTTCACCGCCTTGATCATCGGCAACTAGGATTGCTGATCTCTCACCGTACCTGATAGCGCAGCCATGTACCGCAATCAGTACGACACAGATGTTACTGTGTTCAGCCCAGCCGGGCGTATCCACCAGGTGGAGTATGCAATGGAAGCTGTGAAGCAGGGCAGCGCGGTTGTAGGCTTGCGCGGCAAGGATGTGGTCATCCTGGCCTCTCTCAAGCGGTCGCAGTCTGACTTGGCTTCGTTTCAAGAAAAG

Ace file of the UniGene sp_v3.0_unigene159171

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Polysphondylium pallidum RepID=D3BHC9_POLPA	-	-	2.0e-18	69%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Proteasome subunit alpha type	-	-	2.098e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	1.66895e-42	-

Source	Gene names
Sma3	At1g47250; At5g42790; CHLREDRAFT_115213; F8G22.3; GSVIVT00014589001; LOC_Os02g04100; MJB21.17; OSTLU_119643; Os02g0133800; OsI_05746; Ot02g03220; P0030G11.18; P0585B01.3; PAF1; PAF2; PHATRDRAFT_27508; PHATRDRAFT_45998; PHYPADRAFT_112471; PHYPADRAFT_216478

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47250.1	PAF2 20S proteasome alpha subunit F2 chr1:17319220-17320900 FORWARD LENGTH=277	3.0e-21	64%
RefSeq	Arabidopsis thaliana	NP_175158.1	proteasome subunit alpha type-1-B [Arabidopsis thaliana]	4.0e-21	64%
RefSeq	Populus trichocarpa	XP_002307665.1	predicted protein [Populus trichocarpa]	1.0e-21	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS25

Fln msg: Distance to subject end: 207 aas, your sequence is shorter than subject: 62 - 269

Fln protein: MYRNQYDTDVTVFSPAGRIHQVEYAMEAVKQGSAVVGLRGKDVVILASLKRSQSDLASFQEK

Protein Length: 63

Fln nts: AGAACAGGCCTGATACCGCATCTCGCGTTTCGAAGACCCACTCATTGCCCATATCAAGGTCTACCCTCCCGGTTCACCGCCTTGATCATCGGCAACTAGGATTGCTGATCTCTCACCGTACCTGATAGCGCAGCC_-_ATGTACCGCAATCAGTACGACACAGATGTTACTGTGTTCAGCCCAGCCGGGCGTATCCACCAGGTGGAGTATGCAATGGAAGCTGTGAAGCAGGGCAGCGCGGTTGTAGGCTTGCGCGGCAAGGATGTGGTCATCCTGGCCTCTCTCAAGCGGTCGCAGTCTGACTTGGCTTCGTTTCAAGAAAAG

Fln Alignment:

HLKU4M004IU2KT___MYRNQYDTDVTVFSPAGRIHQVEYAMEAVKQGSAVVGLRGKDVVILASLKRSQSDLASFQEK
B8LS25________________MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAVGLRSKTHVVLVCVGKANSEFSSHQKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain