SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159078

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene159078
CCTAATATTGTTATCAACATGTCTGCTAACGGCCAGGAATACGATTATCTCTACAAAGTTGTAGCTCATTGGAGACAGCGGTGTCGGTAAATCCAACTTGCTTTCTCGATTCACCCGTAACGAATTCAATTTGGAAACCAAGTCAACCATTGGTGTAGAATTCGCTACAAGGAGCATTCAAGCCGATGGAAA

Ace file of the UniGene sp_v3.0_unigene159078

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab11b protein n=1 Tax=Xenopus laevis RepID=Q66KS9_XENLA	-	-	7.0e-16	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Ras-related protein Rab11A	-	-	2.299e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	1.877e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sphingolipid metabolism	00600		1.877e-12	%
Sma3	Metabolic pathways	01100		1.877e-12	%

Source	Gene names
Sma3	24.t00014; 80A08_30; ARA-2; ARA-4; AT1G06400; AT2G43130; AT4g18430; AT4g18800; At1g01200; At1g06400; At1g09630; At1g16920; At1g18200; At1g28550; At2g33870; At2g43130; At3g15060; At3g15060/K15M2_21; At3g46830; At4g18430; At4g18800; At5g45750; At5g47960; At

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	Golgi-associated vesicle	GO:0005798	Cellular Component	-
Sma3	trans-Golgi network	GO:0005802	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	inter-Golgi cisterna vesicle-mediated transport	GO:0048219	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GCK	IPR012891	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-
Sma3	DNA-directed DNA polymerase, family A, conserved site	IPR019760	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16920.1	RAB11, ATRABA1B, RABA1b RAB GTPase homolog A1B chr1:5787489-5789147 REVERSE LENGTH=216	6.0e-19	82%
RefSeq	Arabidopsis thaliana	NP_173136.1	Ras-related protein RABA1b [Arabidopsis thaliana]	8.0e-19	82%
RefSeq	Populus trichocarpa	XP_002334115.1	predicted protein, partial [Populus trichocarpa]	7.0e-20	84%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV29

Fln msg: Distance to subject end: 157 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 42 - 216

Fln protein: LIGDSGVGKSNLLSRFTRNEFNLETKSTIGVEFATRSIQADG

Protein Length: 43

Fln nts: CCTAATATTGTTATCAACATGTCTGCTAACGGCCAGGAATACGATTATCTCTACAAAGTTGTAGCTCATTGGAGACAGCGGTGTCGGTAAATCCAACTTGCTTTCTCGATTCACCCGTAACGAATTCAATTTGGAAACCAAGTCAACCATTGGTGTAGAATTCGCTACAAGGAGCATTCAAGCCGATGGAAA

Fln Alignment:

HLKU4M004IF61V___KL*LIGDSGVGKSNLLSRFTRNEFNLETKSTIGVEFATRSIQADG
A9NV29________________KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain