SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159066

Length: 359 nt

UniGene Fasta

>sp_v3.0_unigene159066
TGAAGTGGATCTTTGCTTCCCTGCAGTTGTTTAAGAAGACGAATCGAAGAGAGGTTTCTTAATCCAAACGAGCGCAGAAGAGATGGCAGCGGAGCAGGAAGACGGAGTGACGGAGTACCTTTACAAAGTGCTTGTTGTAGGTGACATTGGCACGGGTAAGACCTCGATCATCAAGCGTTATGTCCACAACATTTTCTCCATGCACTACAAGTCCACAATCGGAGTGGACTTCGCCCTGAAGGTCATCAACTGGGATCCCAAGACCATTGTGCGCCTGCAATTGTGGGATATTGCCGGTCAGGAGCGCTTCGGTAACATGACTCGAGTGTACTACAAGGAGGCCGTAGGTGCCTTCGTTG

Ace file of the UniGene sp_v3.0_unigene159066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab GTPase n=1 Tax=Dictyostelium fasciculatum RepID=F4PYB3_9MYCE	-	-	2.0e-40	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	RAS related GTP binding protein	-	-	4.873e-06	-

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60860.1	AtRABA1f, RABA1f RAB GTPase homolog A1F chr5:24484750-24485565 FORWARD LENGTH=217	9.0e-24	48%
RefSeq	Arabidopsis thaliana	NP_200894.1	RAB GTPase homolog A1F [Arabidopsis thaliana]	1.0e-23	48%
RefSeq	Populus trichocarpa	XP_002331964.1	predicted protein [Populus trichocarpa]	8.0e-23	47%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV29

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 92 - 216

Fln protein: MAAEQEDGVTEYLYKVLVVGDIGTGKTSIIKRYVHNIFSMHYKSTIGVDFALKVINWDPKTIVRLQLWDIAGQERFGNMTRVYYKEAVGAFV

Protein Length: 93

Fln nts: TGAAGTGGATCTTTGCTTCCCTGCAGTTGTTTAAGAAGACGAATCGAAGAGAGGTTTCTTAATCCAAACGAGCGCAGAAGAG_-_ATGGCAGCGGAGCAGGAAGACGGAGTGACGGAGTACCTTTACAAAGTGCTTGTTGTAGGTGACATTGGCACGGGTAAGACCTCGATCATCAAGCGTTATGTCCACAACATTTTCTCCATGCACTACAAGTCCACAATCGGAGTGGACTTCGCCCTGAAGGTCATCAACTGGGATCCCAAGACCATTGTGCGCCTGCAATTGTGGGATATTGCCGGTCAGGAGCGCTTCGGTAACATGACTCGAGTGTACTACAAGGAGGCCGTAGGTGCCTTCGTTG

Fln Alignment:

HLKU4M004J0ERV___AEQEDGVTEYLYKVLVVGDIGTGKTSIIKRYVHNIFSMHYKSTIGVDFALKVINWDPKTIVRLQLWDIAGQERFGNMTRVYYKEAVGAFV
A9NV29________________AYKVDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDGK-MIKAQIWDTAGQERYRAITSAYYRGAVGALL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain