SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159064

Length: 177 nt

UniGene Fasta

>sp_v3.0_unigene159064
GATAAATTGAGCAATTAACGTCTGGTCAATTTCTTTCTGAGGCTGAAGTTTTGAAACTATGCGAAAAGGCAAAAGAAATCTTATCTCAAGAACCTAATGCAAAGCCAGTGAGAGCGCCTGTAACTGTCTGTGGAGACATTCACGGTCAATTTTATGATTTACTCGAATTGTTTGCTA

Ace file of the UniGene sp_v3.0_unigene159064

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Monosiga brevicollis RepID=A9URA7_MONBE	-	-	5.0e-15	69%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Serine/threonine protein phosphatase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	At1g50370; At1g59830; At1g69960; At3g19980; At3g58500; At4g26720; At5g55260; CHLREDRAFT_132486; CHLREDRAFT_193562; EMB2736; EP124; EP129; EP7; F10M23.60; F14I3.5; F14P22.90; F20P5.30; F23H11.15; FYPP1; FYPP3; GSVIVT00000049001; GSVIVT00003715001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	protein phosphatase type 2A complex	GO:0000159	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plastid stroma	GO:0009532	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69960.1	PP2A serine/threonine protein phosphatase 2A chr1:26348892-26350511 REVERSE LENGTH=307	4.0e-19	67%
RefSeq	Arabidopsis thaliana	NP_177154.1	serine/threonine-protein phosphatase PP2A-5 catalytic subunit [Arabidopsis thaliana]	6.0e-19	67%
RefSeq	Populus trichocarpa	XP_002309283.1	predicted protein [Populus trichocarpa]	2.0e-19	67%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR38

Fln msg: Distance to subject end: 239 aas, atg_distance in limit (1-15): atg_distance = 10, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 57 - 306

Fln protein: IEQLTSGQFLSEAEVLKLCEKAKEILSQEPNAKPVRAPVTVCGDIHGQFYDLLELFA

Protein Length: 58

Fln nts: GATAAATTGAGCAATTAACGTCTGGTCAATTTCTTTCTGAGGCTGAAGTTTTGAAACTATGCGAAAAGGCAAAAGAAATCTTATCTCAAGAACCTAATGCAAAGCCAGTGAGAGCGCCTGTAACTGTCTGTGGAGACATTCACGGTCAATTTTATGATTTACTCGAATTGTTTGCTA

Fln Alignment:

HLKU4M004IRVCT___IEQLTSGQFLSEAEVLKLCEKAKEILSQEPNAKPVRAPVTVCGDIHGQFYDLLELF
B8LR38________________IEQLLECKYLSEAEVKSLCEHARAILVEEWNVQPVKCPVTVCGDIHGQFHDLLELF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain