SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159062

Length: 446 nt

UniGene Fasta

>sp_v3.0_unigene159062
ACTCAGCTTCCCTTCTTCAACACACGCGACCGCGGCCCTCTAACCTTCACTCTACCTCTCACACACATCAAAGAAGATGAACCCCAAGTGTGGTGTCTGCAACAAGACTGTCTACCCCGTGGAGAAGATCAGCCCGGGTAATGGTAAGAACTACCACAAGCTGTGCTTCAAGTGCTCGGTGTGCAAGATCACGCTCAACCTGAAGAACTTCAAGTCGCACGAGGGTACCCTCTACTGCCCCGTCCACTACGCGCCCGCCCAGGTCGAGGTCAGGTCGTTCGAATCGGAGCGGAAGGCCGACCAGGGTGAGTACGCCAGCAACCCAGCCAACACCCAGGCCGCCGCTGGTGGCGCTTGGGGCCAATCTACTCCCGATTCGGGTGAGTACGGCGGTGGCGCTGCTGCTGGTGGATACGATCAGGGCTATGACCAGGGTGCTGCTGGTG

Ace file of the UniGene sp_v3.0_unigene159062

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LIM-type zinc finger-containing protein n=1 Tax=Dictyostelium fasciculatum RepID=F4Q264_9MYCE	-	-	4.0e-14	64%
FL-Next	tr=Lim domain protein; Pinus pinaster (Maritime pine).	-	-	0.0	44%
Sma3	LIM-domain SF3 protein	-	-	4.386e-06	-

Source	Gene names
Sma3	SF3; WLIM2;

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, LIM-type	IPR001781	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39900.1	WLIM2a GATA type zinc finger transcription factor family protein chr2:16659136-16660267 FORWARD LENGTH=200	1.0e-15	52%
RefSeq	Arabidopsis thaliana	NP_181519.1	LIM domain-containing protein [Arabidopsis thaliana]	2.0e-15	52%
RefSeq	Populus trichocarpa	XP_002315180.1	predicted protein [Populus trichocarpa]	6.0e-15	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: F4MKL9

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 123 - 197

Fln protein: MNPKCGVCNKTVYPVEKISPGNGKNYHKLCFKCSVCKITLNLKNFKSHEGTLYCPVHYAPAQVEVRSFESERKADQGEYASNPANTQAAAGGAWGQSTPDSGEYGGGAAAGGYDQGYDQGAAG

Protein Length: 124

Fln nts: ACTCAGCTTCCCTTCTTCAACACACGCGACCGCGGCCCTCTAACCTTCACTCTACCTCTCACACACATCAAAGAAG_-_ATGAACCCCAAGTGTGGTGTCTGCAACAAGACTGTCTACCCCGTGGAGAAGATCAGCCCGGGTAATGGTAAGAACTACCACAAGCTGTGCTTCAAGTGCTCGGTGTGCAAGATCACGCTCAACCTGAAGAACTTCAAGTCGCACGAGGGTACCCTCTACTGCCCCGTCCACTACGCGCCCGCCCAGGTCGAGGTCAGGTCGTTCGAATCGGAGCGGAAGGCCGACCAGGGTGAGTACGCCAGCAACCCAGCCAACACCCAGGCCGCCGCTGGTGGCGCTTGGGGCCAATCTACTCCCGATTCGGGTGAGTACGGCGGTGGCGCTGCTGCTGGTGGATACGATCAGGGCTATGACCAGGGTGCTGCTGGTG

Fln Alignment:

HLKU4M004IF4OI___KCGVCNKTVYPVEKISPGNGKNYHKLCFKCSVCKITLNLKNFKSHEGTLYCPVHYAPAQVEV----RSFESERKA
F4MKL9________________KCKACDKTVYFVDQLS-ADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPHFDQLFRESGNFNKNFQSQRSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain