SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159024

Length: 291 nt

UniGene Fasta

>sp_v3.0_unigene159024
CTCCCGCTCCGATCGTCCGCGTGAACCGCACCGCATCTTAATCGTCACTCAATAGAAGATGAGTCAGGTTCCGCGTTCCTTGCACGTCCAGGAGGAGGATGTCCAGAAGATGCTGGCCGCTGAGGTCCACGTCGGCTCGAACAACCTCGACCCCAAGATGGAGCGTTACGTCTGGAGGCGCCGCCAGGACGGCGTGCACATCCTTGACCTCGGCAAGACCTGGGACAAGCTCGTCCTCGCTGCCCGCGTCATCGCCGGCATTGAGCACGCGTCCGACATTTGCGTCATCTC

Ace file of the UniGene sp_v3.0_unigene159024

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laminin-binding protein n=1 Tax=Acanthamoeba healyi RepID=Q6V4W8_9EUKA	-	-	8.0e-28	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	40S ribosomal protein SA	-	-	1.041e-28	-

Source	Gene names
Sma3	179B; AT1G72370; At1g72370; At3g04770; B1056G08.113; F7O18.26; GSVIVT00034021001; LOC_Os03g08440; LRP; MICPUCDRAFT_13384; MICPUN_107814; OSJNBa0032G08.18; Os07g0616600; OsI_10272; OsI_11954; OsI_26872; OsJ_09668; OsJ_25132; Ot03g03270; PHATRDRAFT_13682; P

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S2	IPR001865	-	-
Sma3	Ribosomal protein S2, eukaryotic/archaeal	IPR005707	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04770.1	RPSAb 40s ribosomal protein SA B chr3:1309465-1310846 REVERSE LENGTH=332	2.0e-21	54%
RefSeq	Arabidopsis thaliana	NP_187128.1	40S ribosomal protein Sa-2 [Arabidopsis thaliana]	2.0e-21	54%
RefSeq	Populus trichocarpa	XP_002332146.1	predicted protein [Populus trichocarpa]	3.0e-24	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV56

Fln msg: Distance to subject end: 241 aas, your sequence is shorter than subject: 77 - 319

Fln protein: MSQVPRSLHVQEEDVQKMLAAEVHVGSNNLDPKMERYVWRRRQDGVHILDLGKTWDKLVLAARVIAGIEHASDICVI

Protein Length: 78

Fln nts: CTCCCGCTCCGATCGTCCGCGTGAACCGCACCGCATCTTAATCGTCACTCAATAGAAG_-_ATGAGTCAGGTTCCGCGTTCCTTGCACGTCCAGGAGGAGGATGTCCAGAAGATGCTGGCCGCTGAGGTCCACGTCGGCTCGAACAACCTCGACCCCAAGATGGAGCGTTACGTCTGGAGGCGCCGCCAGGACGGCGTGCACATCCTTGACCTCGGCAAGACCTGGGACAAGCTCGTCCTCGCTGCCCGCGTCATCGCCGGCATTGAGCACGCGTCCGACATTTGCGTCATCTC

Fln Alignment:

HLKU4M004JXI53___MSQVPRSLHVQEEDVQKMLAAEVHVGSNNLDPKMERYVWRRRQDGVHILDLGKTWDKLVLAARVIAGIEHASDICV
A9NV56________________MAQKMGGLSQKEADVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTWEKLQLAARVIVAIENPQDIIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain