SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159018

Length: 302 nt

UniGene Fasta

>sp_v3.0_unigene159018
AATTTGGGCTCCAAGACCATCCCAAGGTCCCCACAAGCTGAGAGAATCCCTTCCATTGATGTTGATCTTAAGAAACAGACTTAAGTATGCTTTGACTGGAAAGGAGACTAAGATGATCTGCATGCAGAAGCTTGTCCGTGTCGATGGCAAAGTTCAACCGACCCTAACTTCCCTGCTGGTTTCATGGATGTCATTGAGCTCCCCAAGGCTGGTGACCAATTCCGTCTCATCTTTGACACCAAGAGTCGCTATGTGCTGCATAGAATTAGTGACGAGGAGAAGGCTTACAAGCTTTGCCGTGT

Ace file of the UniGene sp_v3.0_unigene159018

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S4 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WD75_9STRA	-	-	8.0e-36	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	40S ribosomal protein S4	-	-	6.787e-17	-

Source	Gene names
Sma3	At2g17360; At5g07090; At5g58420; BiRP1; CHLREDRAFT_188837; F5J6.12; GSVIVT00001285001; GSVIVT00024035001; MICPUCDRAFT_36856; MICPUN_90851; MOJ9.26; MQJ2_10; OJ1393_A07.10; OSTLU_18526; Os01g0358400; Os02g0105900; Os05g0368300; OsI_01884; OsI_05494; OsI_19

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07090.1	Ribosomal protein S4 (RPS4A) family protein chr5:2202410-2203805 FORWARD LENGTH=262	1.0e-27	61%
RefSeq	Arabidopsis thaliana	NP_568179.1	40S ribosomal protein S4-2 [Arabidopsis thaliana]	2.0e-27	61%
RefSeq	Populus trichocarpa	XP_002318967.1	predicted protein, partial [Populus trichocarpa]	1.0e-27	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNW1

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 157 and 157, Distance to subject end: 137 aas, your sequence is shorter than subject: 100 - 263

Fln protein: IWAPRPSQGPHKLRESLPLMLILRNRLKYALTGKETKMICMQKLVRVDGKVxxDPNFPAGFMDVIELPKAGDQFRLIFDTKSRYVLHRISDEEKAYKLCR

Protein Length: 101

Fln nts: AATTTGGGCTCCAAGACCATCCCAAGGTCCCCACAAGCTGAGAGAATCCCTTCCATTGATGTTGATCTTAAGAAACAGACTTAAGTATGCTTTGACTGGAAAGGAGACTAAGATGATCTGCATGCAGAAGCTTGTCCGTGTCGATGGCAAAGTTxxxxxxGACCCTAACTTCCCTGCTGGTTTCATGGATGTCATTGAGCTCCCCAAGGCTGGTGACCAATTCCGTCTCATCTTTGACACCAAGAGTCGCTATGTGCTGCATAGAATTAGTGACGAGGAGAAGGCTTACAAGCTTTGCCGTGT

Fln Alignment:

HLKU4M004JQCHM___WAPRPSQGPHKLRESLPLMLILRNRLKYALTGKETKMICMQKLVRVDGKVQTDPNFPAGFMDVIELPKAGDQFRLIFDTKSRYVLHRISDEEKAYKLCR
A9NNW1________________FAPKPSPGPHKGRECLPLVVLIRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLSIAKTNENFRLLYDAKGRFRLHSIKDEEAKYKLCK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain