SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159001

Length: 171 nt

UniGene Fasta

>sp_v3.0_unigene159001
CCAGAGAGGACCCTGCCAACTTTGGTACCCCTCGCCGTTCTTTCAAGGGCCACTCCCATTACATCTCCGATGTCGTCATCTCCTCTGACGGTCAATTTGTTTTGTCTGGTTCGTGGGATGGAACTCTCCGTCTTTGGGACATTAATGCTGGTGTTTGCCATCGCCAATTTA

Ace file of the UniGene sp_v3.0_unigene159001

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: LOW QUALITY PROTEIN: guanine nucleotide-binding protein subunit beta-2-like 1-like n=5 Tax=Amniota RepID=UPI0001D62689	-	-	7.0e-16	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Guanine nucleotide-binding protein subunit beta-like protein	-	-	3.182e-15	-

Source	Gene names
Sma3	ARCA; AT1G18080; At1g18080; CHLREDRAFT_105734; Cblp; GB1; GBLP; GSVIVT00017791001; LOC_Os01g49290; LeArcA2; MICPUCDRAFT_28307; MICPUN_94482; OSTLU_19794; OSTLU_48240; Os01g0686800; OsI_03315; Ot13g01560; PHYPADRAFT_159747; PHYPADRAFT_223462; PHYPADRAFT_22

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18080.1	ATARCA, RACK1A_AT, RACK1A Transducin/WD40 repeat-like superfamily protein chr1:6222325-6223901 FORWARD LENGTH=327	2.0e-18	60%
RefSeq	Arabidopsis thaliana	NP_173248.1	guanine nucleotide-binding protein subunit beta-like protein [Arabidopsis thaliana]	2.0e-18	60%
RefSeq	Populus trichocarpa	XP_002321505.1	predicted protein [Populus trichocarpa]	1.0e-18	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1N7

Fln msg: Distance to subject end: 215 aas, your sequence is shorter than subject: 56 - 316

Fln protein: REDPANFGTPRRSFKGHSHYISDVVISSDGQFVLSGSWDGTLRLWDINAGVCHRQF

Protein Length: 57

Fln nts: CCAGAGAGGACCCTGCCAACTTTGGTACCCCTCGCCGTTCTTTCAAGGGCCACTCCCATTACATCTCCGATGTCGTCATCTCCTCTGACGGTCAATTTGTTTTGTCTGGTTCGTGGGATGGAACTCTCCGTCTTTGGGACATTAATGCTGGTGTTTGCCATCGCCAATTTA

Fln Alignment:

HLKU4M004JCZKB___EDPANFGTPRRSFKGHSHYISDVVISSDGQFVLSGSWDGTLRLWDINAGVCHRQF
A9P1N7________________KEPEKYGVPRRRLTGHSHFVQDVVISSDGQFALSGSWDSELRLWDLNTGLTTRRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain