SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158978

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene158978
GACGCAAAGAGAGAGACGAGCAGTCCTCTTGCTAGAAGAAACAAGACGACGAGGCTGGGAGGAAAATGGGCAGCGCCTTCTCCGAATTGTTCTCGAAATTGGGCAAGAAGCCCGTACGCCTGCTCATGCTCGGTCTCGACGCGGCGGGCAAGACGACGGTCCTCTACAAGCTGAAGCTGGGCGAGTTTGTACAGACCTATCCCCACAATCGGGTCCAACGTGGAAACGGTCAAGTACAAGAACTTGCG

Ace file of the UniGene sp_v3.0_unigene158978

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor n=2 Tax=Ajellomyces capsulatus RepID=C0NKH9_AJECG	-	-	7.0e-14	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	ADP-ribosylation factor 1	-	-	1.448e-12	-

Source	Gene names
Sma3	ARF; ARF1; ARF2-A; ARF2-B; ARF3; ARFA1-A; ARFA1-D; ARFA1A; ARFA1B; ARFA2-A; ARFA2-B; Arf; Arf1; ArfA11; ArfA12; ArfA13; ArfA14; ArfA15; At1g10630; At1g23490; At1g70490; At3g62290; At5g14670; CHLREDRAFT_186126; CHLREDRAFT_2332; F24J13.6; F28C11.12; F5O8.5;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	phosphatidylinositol 3-kinase complex	GO:0005942	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	1-phosphatidylinositol-3-kinase activity	GO:0016303	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	phosphatidylinositol phosphorylation	GO:0046854	Biological Process	-
Sma3	phosphatidylinositol-mediated signaling	GO:0048015	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Phosphoinositide 3-kinase, C2	IPR002420	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Phosphatidylinositol Kinase	IPR015433	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62290.1	ATARFA1E, ARFA1E ADP-ribosylation factor A1E chr3:23052287-23053545 FORWARD LENGTH=181	4.0e-15	70%
RefSeq	Arabidopsis thaliana	NP_001190162.1	ADP-ribosylation factor A1E [Arabidopsis thaliana]	5.0e-15	70%
RefSeq	Populus trichocarpa	XP_002318934.1	predicted protein [Populus trichocarpa]	8.0e-15	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPL2

Fln msg: Overlapping hits, possible frame ERROR between 203 and 199, Distance to subject end: 119 aas, your sequence is shorter than subject: 61 - 181

Fln protein: MGSAFSELFSKLGKKPVRLLMLGLDAAGKTTVLYKLKLGEFVQTxxxTIGSNVETVKYKNL

Protein Length: 62

Fln nts: GACGCAAAGAGAGAGACGAGCAGTCCTCTTGCTAGAAGAAACAAGACGACGAGGCTGGGAGGAAA_-_ATGGGCAGCGCCTTCTCCGAATTGTTCTCGAAATTGGGCAAGAAGCCCGTACGCCTGCTCATGCTCGGTCTCGACGCGGCGGGCAAGACGACGGTCCTCTACAAGCTGAAGCTGGGCGAGTTTGTACAGACCxxxxxxxxxACAATCGGGTCCAACGTGGAAACGGTCAAGTACAAGAACTTGCG

Fln Alignment:

HLKU4M004H4DMG___MGSAFSELFSKL-GKKPVRLLMLGLDAAGKTTVLYKLKLGEFVQTxxTIGSNVETVKYKNL
C0PPL2________________MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTxxTIGFNVETVEYKNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain