SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158971

Length: 138 nt

UniGene Fasta

>sp_v3.0_unigene158971
ATACGCAACGATTCATCAACATCTGCTTTGGGGCACCAATTGGTCAGGGATATGGTCTCACTGAAACTTGTGCTGGTGCAACCTTTTCTGAATGGGATGATATGACTGTTGGTCGTGTTGGTCCTCCACTTCCCTGTT

Ace file of the UniGene sp_v3.0_unigene158971

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative AMP-binding protein [Arabidopsis thaliana] ref\|NP_849934.1\| putative AMP-binding protein [Arabidopsis thaliana] sp\|Q9SJD4.1\|LACS8_ARATH RecName: Full=Long chain acyl-CoA synthetase 8 gb\|AAM28875.1\|AF503758_1 long chain acyl-CoA synthetase 8 [Arab	-	-	4.0e-18	88%
FL-Next	sp=Long chain acyl-CoA synthetase 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	88%
Sma3	Long-chain-fatty-acid CoA ligase, putative	-	-	3.681e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	5.084e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid metabolism	00071		5.084e-17	%
Sma3	Metabolic pathways	01100		5.084e-17	%

Source	Gene names
Sma3	At1g77590; At2g04350; GSVIVT00015387001; GSVIVT00029070001; LACS8; LACS9; LOC_Os11g06880; LOC_Os12g07110; OSJNBa0065C11.10; Os05g0317200; Os11g0169800; Os12g0168700; OsI_19441; OsI_35270; OsI_37613; OsJ_18037; OsJ_33112; OsJ_35359; PHYPADRAFT_142073; PHYP

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-
Sma3	Lipocalin	IPR002345	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04350.1	LACS8 AMP-dependent synthetase and ligase family protein chr2:1516086-1519178 FORWARD LENGTH=720	1.0e-23	88%
RefSeq	Arabidopsis thaliana	NP_849934.1	putative AMP-binding protein [Arabidopsis thaliana]	1.0e-23	88%
RefSeq	Populus trichocarpa	XP_002302236.1	predicted protein [Populus trichocarpa]	2.0e-21	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SJD4

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 45 - 720

Fln protein: TQRFINICFGAPIGQGYGLTETCAGATFSEWDDMTVGRVGPPLPC

Protein Length: 46

Fln nts: ATACGCAACGATTCATCAACATCTGCTTTGGGGCACCAATTGGTCAGGGATATGGTCTCACTGAAACTTGTGCTGGTGCAACCTTTTCTGAATGGGATGATATGACTGTTGGTCGTGTTGGTCCTCCACTTCCCTGTT

Fln Alignment:

HLKU4M004IXZFJ___TQRFINICFGAPIGQGYGLTETCAGATFSEWDDMTVGRVGPPLPC
Q9SJD4________________SQRFINICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain