SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158914

Length: 542 nt

UniGene Fasta

>sp_v3.0_unigene158914
ATACAGCAGGGCAAGAACGATTTCGTTCACTGGCGCCAATGTATTACCGCGGAGCAAGTGCAGCCTTATTAGTATATGATATAAGCTCAGCTACGTCGTTTAACAAAGTAAAAGAATGGGTTAATGAATTGAAATTAAACGTACCTGAAGATATAATTCTGGTAGTAGTGGGAAATAAGGCCGATAGGGAAAAACATAGACAAATGAAAGCAGAAGTAGGTCAGGAGTACGCCCGGTCTGTTGGTGCTTCTTTCATAGAGACTTCCGCAAAGTCAAAGCAAGGAATTGACGAAGTATTTAATGACATTGCACAACGTCTGATAGCTAATCAAAATTTAACACGACCGGTCGGCGGAAGTGCTAATGGATCTAATTCTAAAGTTGGTGGATCTGCAAATTCTACTGGTTCTAGTCTCCTACCATTGTTGTTACTAATTCTGAGAAAAAGAATGACCCTGATGTTGGTGATGATTCTTGTTGTCAAGACGGATGAAAAAAGTGATTTTGTAGTATGAAGTTATGTATGTTGAGGGCAGATTTTC

Ace file of the UniGene sp_v3.0_unigene158914

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab-type small G protein n=1 Tax=Thalassiosira pseudonana RepID=B8BRY5_THAPS	-	-	4.0e-29	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Small GTP-binding protein	-	-	3.749e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	2.005e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sphingolipid metabolism	00600		2.005e-07	%
Sma3	Metabolic pathways	01100		2.005e-07	%

Source	Gene names
Sma3	ARA6; AT3G54840; At3g54840; CHLREDRAFT_81259; F28P10.180; GSVIVT00016755001; GSVIVT00018151001; GSVIVT00023506001; LOC_Os03g05740; LOC_Os10g30520; LOC_Os12g43550; Os03g0151900; Os06g0687100; Os10g0441800; Os12g0631100; OsI_10050; OsI_24236; OsI_39224; OsJ

Source	GOs	Term	Type	Identity
Sma3	early endosome	GO:0005769	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	external side of endosome membrane	GO:0010009	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-
Sma3		IPR015599	-	-
Sma3		IPR015601	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G19640.1	ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B Ras-related small GTP-binding family protein chr4:10687441-10689449 REVERSE LENGTH=200	1.0e-29	45%
RefSeq	Arabidopsis thaliana	NP_193699.1	Ras-related small GTP-binding family protein [Arabidopsis thaliana]	2.0e-29	45%
RefSeq	Populus trichocarpa	XP_002324416.1	predicted protein [Populus trichocarpa]	1.0e-33	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP42

Fln msg: your sequence is shorter than subject: 171 - 198

Fln protein: TAGQERFRSLAPMYYRGASAALLVYDISSATSFNKVKEWVNELKLNVPEDIILVVVGNKADREKHRQMKAEVGQEYARSVGASFIETSAKSKQGIDEVFNDIAQRLIANQNLTRPVGGSANGSNSKVGGSANSTGSSLLPLLLLILRKRMTLMLVMILVVKTDEKSDFVV*

Protein Length: 172

Fln nts: ATACAGCAGGGCAAGAACGATTTCGTTCACTGGCGCCAATGTATTACCGCGGAGCAAGTGCAGCCTTATTAGTATATGATATAAGCTCAGCTACGTCGTTTAACAAAGTAAAAGAATGGGTTAATGAATTGAAATTAAACGTACCTGAAGATATAATTCTGGTAGTAGTGGGAAATAAGGCCGATAGGGAAAAACATAGACAAATGAAAGCAGAAGTAGGTCAGGAGTACGCCCGGTCTGTTGGTGCTTCTTTCATAGAGACTTCCGCAAAGTCAAAGCAAGGAATTGACGAAGTATTTAATGACATTGCACAACGTCTGATAGCTAATCAAAATTTAACACGACCGGTCGGCGGAAGTGCTAATGGATCTAATTCTAAAGTTGGTGGATCTGCAAATTCTACTGGTTCTAGTCTCCTACCATTGTTGTTACTAATTCTGAGAAAAAGAATGACCCTGATGTTGGTGATGATTCTTGTTGTCAAGACGGATGAAAAAAGTGATTTTGTAGTATGA___AGTTATGTATGTTGAGGGCAGATTTTC

Fln Alignment:

HLKU4M004IJ4FM___TAGQERFRSLAPMYYRGASAALLVYDISSATSFNKVKEWVNELKLNVPEDIILVVVGNKADREKHRQMKAEVGQEYARSVGASFIETSAKSKQGIDEVFNDIAQRLI-ANQNLTRPVGGSANGSNSKVGGSANS
B8LP42________________TAGQERYHSLAPMYYRGAAAAIVVYDITSLDSFNRAKKWVQELQRQGNPNMVMTLAGNKADLTAKRKVELEEAQAYATENGLFFIETSAKTAQNVNELFYDIAKRVLKARPDKSTP--GLLLGNRSEEGSRFSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain