SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158902

Length: 471 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene158902
AAGATTGCACAGCAGTACTATAGGATGTACCACGCTCAAATCCCAGTCAACCAGATCGTGAGGGATCTTGCTGCCATCATGCAGGAATTCACACAATCAGGAGGTGTGAGGCCGTTTGGAGTGTCGCTTTTAATTGCTGGCTATGATGAGGTGGCCGGGCCACAGCTTTACCAAGTGGACCCTTCAGGTTCTTACTGGGCGTGGAAAGCCTCCGCCATCGGTAAAAGCATGATCAATGCCAAGACCTTCCTTGAAAAGCGCTACAAGGAAGATATAGGCCTGGAAGATGCTATCCACACGGCCATACTTACGCTCAAGGAAGGCTTTGAAGGCGAGATGACAGAAAGCAACATCGAGCTGGGCGTTGTGTCTGTCATTGACAAGAAGCCCGTCTTCAGAATACTGACCCCGGCCGAGGTCAAGGACTACCTGGGCGAGGTCCAATAAATCGTATGACCATTTCATCATACG

Ace file of the UniGene sp_v3.0_unigene158902 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	proteasome subunit alpha type-2-B [Arabidopsis thaliana] ref\|NP_001077845.1\| proteasome subunit alpha type-2-B [Arabidopsis thaliana] ref\|NP_001077846.1\| proteasome subunit alpha type-2-B [Arabidopsis thaliana] sp\|Q8L4A7.1\|PSA2B_ARATH RecName: Full=Protea	-	-	0.0	70%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Proteasome subunit alpha type	-	-	2.095e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	9.811e-10	-

Source	Gene names
Sma3	AT1G16470; At1g16470; At1g79210; CHLREDRAFT_194387; GSVIVT00030187001; GSVIVT00031120001; MICPUCDRAFT_49610; MICPUN_56599; OJ1626_B09.4; OSTLU_41065; Os02g0634900; OsI_08192; OsI_29423; OsJ_07639; OsJ_11088; Ot06g00230; PAB1; PAB2; PHATRDRAFT_49897; PHYPA

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G16470.1	PAB1 proteasome subunit PAB1 chr1:5623122-5625439 FORWARD LENGTH=235	70%
RefSeq	Arabidopsis thaliana	NP_001031057.1	proteasome subunit alpha type-2-A [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002333127.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLK4

Fln msg: your sequence is shorter than subject: 149 - 235

Fln protein: KIAQQYYRMYHAQIPVNQIVRDLAAIMQEFTQSGGVRPFGVSLLIAGYDEVAGPQLYQVDPSGSYWAWKASAIGKSMINAKTFLEKRYKEDIGLEDAIHTAILTLKEGFEGEMTESNIELGVVSVIDKKPVFRILTPAEVKDYLGEVQ*

Protein Length: 150

Fln nts: AAGATTGCACAGCAGTACTATAGGATGTACCACGCTCAAATCCCAGTCAACCAGATCGTGAGGGATCTTGCTGCCATCATGCAGGAATTCACACAATCAGGAGGTGTGAGGCCGTTTGGAGTGTCGCTTTTAATTGCTGGCTATGATGAGGTGGCCGGGCCACAGCTTTACCAAGTGGACCCTTCAGGTTCTTACTGGGCGTGGAAAGCCTCCGCCATCGGTAAAAGCATGATCAATGCCAAGACCTTCCTTGAAAAGCGCTACAAGGAAGATATAGGCCTGGAAGATGCTATCCACACGGCCATACTTACGCTCAAGGAAGGCTTTGAAGGCGAGATGACAGAAAGCAACATCGAGCTGGGCGTTGTGTCTGTCATTGACAAGAAGCCCGTCTTCAGAATACTGACCCCGGCCGAGGTCAAGGACTACCTGGGCGAGGTCCAATAA___ATCGTATGACCATTTCATCATACG

Fln Alignment:

HLKU4M004H2W02___KIAQQYYRMYHAQIPVNQIVRDLAAIMQEFTQSGGVRPFGVSLLIAGYDEVAGPQLYQVDPSGSYWAWKASAIGKSMINAKTFLEKRYKEDIGLEDAIHTAILTLKEGFEGEMTESNIELGVVSVIDKKPVFRILTPAEVKDYLGEVQ
A9NLK4________________KQAQQYYKLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDD-NGPQLYQVDPSGSYFSWKASAMGKNVTNAKSFLEKRYTEDMELDDAVHTAILTLKEGFEGQISGKNIEIGVVGT-DRK--FRVLTPAEISDFLAEVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain