SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158899

Length: 142 nt

UniGene Fasta

>sp_v3.0_unigene158899
TCGTTGAAGACACTTCGGTGCAAAGGATTCACATCTTAACACAGAACATCGGCGTGGTCTACTCCGGTATGGGACCCGACTCCAGAGTTCTCATCAGCAGCGGTCGTAAGGCTGCCCAACGTTATTTCAGAAGATATATCGA

Ace file of the UniGene sp_v3.0_unigene158899

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=2 Tax=core eudicotyledons RepID=Q38HU2_SOLTU	-	-	1.0e-09	66%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	Gene names
Sma3	GSVIVT00030187001; OJ1626_B09.4; Os02g0634900; OsI_028410; OsI_08192; OsI_29423; OsJ_07639; OsJ_11088; PAB1; VITISV_038170;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16470.1	PAB1 proteasome subunit PAB1 chr1:5623122-5625439 FORWARD LENGTH=235	9.0e-13	62%
RefSeq	Arabidopsis thaliana	NP_001031057.1	proteasome subunit alpha type-2-A [Arabidopsis thaliana]	1.0e-12	62%
RefSeq	Populus trichocarpa	XP_002318902.1	predicted protein [Populus trichocarpa]	1.0e-12	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLK4

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 46 - 235

Fln protein: VEDTSVQRIHILTQNIGVVYSGMGPDSRVLISSGRKAAQRYFRRYI

Protein Length: 47

Fln nts: TCGTTGAAGACACTTCGGTGCAAAGGATTCACATCTTAACACAGAACATCGGCGTGGTCTACTCCGGTATGGGACCCGACTCCAGAGTTCTCATCAGCAGCGGTCGTAAGGCTGCCCAACGTTATTTCAGAAGATATATCGA

Fln Alignment:

HLKU4M004JXV2T___VEDTSVQRIHILTQNIGVVYSGMGPDSRVLISSGRKAAQRYFRRY
A9NLK4________________VDESSVQKIQLLTSNIGVTYSGMGPDSRVLVRKSRKQAQQYYKLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain