SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158871

Length: 187 nt

UniGene Fasta

>sp_v3.0_unigene158871
CAACGGTTCTCAAGGTGGTCCTCATCGGCAACAGCGGGGTGGGCAAGACGTCGCTCATGCAGCAGTACGTCAACAAGTCGTTCTCGCTGCACTACAAGACCACCATCGGGGCCGACTTCCTCATGAAGGACCTCTTCGTGGAGGACCGGGCCGTCCTGCTCCAAATCTGGGACACGGCTGGGCAGGA

Ace file of the UniGene sp_v3.0_unigene158871

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RAB7 (Fragment) n=1 Tax=Hordeum vulgare RepID=Q3S835_HORVU	-	-	2.0e-18	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Ras-related protein Rab7	-	-	6.908e-13	-

Source	Gene names
Sma3	AT4g09720; At1g22740; At1g49300; At1g52280; At2g21880; At3g16100; At3g18820; At4g09720; AtRAB71; AtRAB72; AtRAB73; AtRAB74; AtRAB76; AtRAB77; B1130G10.11; B1131B07.11; CHLREDRAFT_195521; F13F21.26; F17A8.70; F19K6.10; GSVIVT00005411001; GSVIVT00019379001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22740.1	RAB7, ATRABG3B, RAB75, RABG3B RAB GTPase homolog G3B chr1:8049247-8050494 FORWARD LENGTH=203	4.0e-24	68%
RefSeq	Arabidopsis thaliana	NP_173688.1	Ras-related protein Rab7 [Arabidopsis thaliana]	5.0e-24	68%
RefSeq	Populus trichocarpa	XP_002300895.1	predicted protein [Populus trichocarpa]	6.0e-24	68%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN24

Fln msg: Distance to subject end: 138 aas, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning, your sequence is shorter than subject: 61 - 206

Fln protein: TVLKVVLIGNSGVGKTSLMQQYVNKSFSLHYKTTIGADFLMKDLFVEDRAVLLQIWDTAGQ

Protein Length: 62

Fln nts: CAACGGTTCTCAAGGTGGTCCTCATCGGCAACAGCGGGGTGGGCAAGACGTCGCTCATGCAGCAGTACGTCAACAAGTCGTTCTCGCTGCACTACAAGACCACCATCGGGGCCGACTTCCTCATGAAGGACCTCTTCGTGGAGGACCGGGCCGTCCTGCTCCAAATCTGGGACACGGCTGGGCAGGA

Fln Alignment:

HLKU4M004IP4LE___TVLKVVLIGNSGVGKTSLMQQYVNKSFSLHYKTTIGADFLMKDLFVEDRAVLLQIWDTAGQ
A9NN24________________TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQVEDRLVTMQIWDTAGQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain