SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158840

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene158840
CGATTCGGTCACGGTTCGGCCAAGCTCGCCGCGCAGGCCAAGTCGCGCCAGAAGGTGCTCGACAAGATGCAGGACGCCGGCCTCACCGAGCGCGTGACGACGGACAAGGTGCTCTGCCTGGAGTTCACCGACGTGGGCACCCTGCCCCCGCCCGTGCTGCAGTTCATCGAGGTGAGCTTCGGCTACAACCTGCCGGCCGGCGCCAAGAAGGGCAACTTCCTCTACCGCCGCCTCGACTTTGGCGTGGACCTCGACTCGCGCGTGGCCCTCGTGGGTCCCAACGGTGCGGGCAAGTCGACCCTGCTCAACCTCATGGAGGGCAGCCTCAACCCGACCGACGGCATGGTCAAGCGACACCTCAAGCTCCGAATCGGCAAGTACAAGCAGCACCTCATGGACCAGCTCGACGGCAA

Ace file of the UniGene sp_v3.0_unigene158840

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter [Pteris vittata]	-	-	2.00386e-43	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	ABC transporter	-	-	7.78e-11	-

Source	Gene names
Sma3	ABCT1; AT5G60790; At5g60790; B1130E07.4; B1331F11.24; CHLREDRAFT_132213; FAP151; Fru5_1; GSVIVT00002278001; GSVIVT00002281001; GSVIVT00022186001; GSVIVT00036669001; MICPUCDRAFT_44200; MICPUCDRAFT_70921; MICPUN_55988; MICPUN_58625; MICPUN_83355; OSTLU_1254

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60790.1	ATGCN1, GCN1 ABC transporter family protein chr5:24453760-24455767 REVERSE LENGTH=595	63%
RefSeq	Arabidopsis thaliana	NP_200887.1	ABC transporter F family member 1 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002314297.1	ABC transporter family protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC5

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 137 - 599

Fln protein: RFGHGSAKLAAQAKSRQKVLDKMQDAGLTERVTTDKVLCLEFTDVGTLPPPVLQFIEVSFGYNLPAGAKKGNFLYRRLDFGVDLDSRVALVGPNGAGKSTLLNLMEGSLNPTDGMVKRHLKLRIGKYKQHLMDQLDG

Protein Length: 138

Fln nts: CGATTCGGTCACGGTTCGGCCAAGCTCGCCGCGCAGGCCAAGTCGCGCCAGAAGGTGCTCGACAAGATGCAGGACGCCGGCCTCACCGAGCGCGTGACGACGGACAAGGTGCTCTGCCTGGAGTTCACCGACGTGGGCACCCTGCCCCCGCCCGTGCTGCAGTTCATCGAGGTGAGCTTCGGCTACAACCTGCCGGCCGGCGCCAAGAAGGGCAACTTCCTCTACCGCCGCCTCGACTTTGGCGTGGACCTCGACTCGCGCGTGGCCCTCGTGGGTCCCAACGGTGCGGGCAAGTCGACCCTGCTCAACCTCATGGAGGGCAGCCTCAACCCGACCGACGGCATGGTCAAGCGACACCTCAAGCTCCGAATCGGCAAGTACAAGCAGCACCTCATGGACCAGCTCGACGGCAA

Fln Alignment:

HLKU4M004I55PW___RFGHGSAKLAAQAKSRQKVLDKMQDAGLTERVTTDKVLCLEFTDVGTLPPPVLQFIEVSFGYNLPAGAKKGNFLYRRLDFGVDLDSRVALVGPNGAGKSTLLNLMEGSLNPTDGMVKRHLKLRIGKYKQHLMDQLD
A9NVC5________________RFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFTDVGKLPPPVLQFVEVDFGYT------PENLIYKSIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELTPLDGMVKRHNHLRIAQFHQHLADKLE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain