SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158820

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene158820
GTTCATATCTTTGTTCATATTGATCGCATGATGAAGCTTTGGGACACGGAGAAGGGTGTGTGTATCAGCAAGTTCACGACAGGCAAGACACCTCACGTGGTCAAGTTCAATCCAGATCCTGAGCACTCCAACGAATTCCTGGCTGGCATGTCAGACAAGAAGATTGTTCAGTTTGATATCCGAA

Ace file of the UniGene sp_v3.0_unigene158820

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pre-mRNA-splicing factor n=2 Tax=Metarhizium RepID=E9EL99_METAR	-	-	1.0e-23	92%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	67%

Source	Gene names
Sma3	GSVIVT00028826001; PHYPADRAFT_99420; POPTRDRAFT_565006; POPTRDRAFT_880825;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G10580.1	Transducin/WD40 repeat-like superfamily protein chr1:3491560-3493665 REVERSE LENGTH=573	3.0e-16	64%
RefSeq	Arabidopsis thaliana	NP_172528.2	pre-mRNA-processing factor 17 [Arabidopsis thaliana]	4.0e-16	64%
RefSeq	Populus trichocarpa	XP_002315592.1	predicted protein [Populus trichocarpa]	7.0e-16	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TZR5

Fln msg: Distance to subject end: 173 aas, your sequence is shorter than subject: 61 - 577

Fln protein: VHIFVHIDRMMKLWDTEKGVCISKFTTGKTPHVVKFNPDPEHSNEFLAGMSDKKIVQFDIR

Protein Length: 62

Fln nts: GTTCATATCTTTGTTCATATTGATCGCATGATGAAGCTTTGGGACACGGAGAAGGGTGTGTGTATCAGCAAGTTCACGACAGGCAAGACACCTCACGTGGTCAAGTTCAATCCAGATCCTGAGCACTCCAACGAATTCCTGGCTGGCATGTCAGACAAGAAGATTGTTCAGTTTGATATCCGAA

Fln Alignment:

HLKU4M004IK9HV___DRMMKLWDTEKGVCISKFTTGKTPHVVKFNPDPEHSNEFLAGMSDKKIVQFDI
A9TZR5________________DRKIKLWDTETGQVISTFSTGKIPYVVKFNPDDDKQNVLLAGMSDKKIVQWDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain