SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158796

Length: 398 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene158796
GATCCCATTCAAGGCAGAGTGCTGTGCGAGCGGCTCTCGAGCTTCGTGCAGCTCTACACGCTCTATGGCTCCGTGAGGCCGTTTGGATGTTCGGTGCTTTTAGGATGTGTAGATAAGCAGGGACCACAGTTGTTCATGATCGAACCATCCGGCACTTCATGGGGTTACTACGCTTGTGCAATTGGTAAAGGCAGTAGGACCGCTAAAACGGAATTGGAGAAGCTTAAGCTGAGCGAGATGACTGCGCGGGAAGCTGTCAAAGAAGCCGCCAGAATAATTCACTTGGTGCACGACGATGTGAAGGACAAAGCCTTTGAGCTGGAATTGAGCTGGATCTGCGAAGAGACGAAGAATCTTCATCAATTCGTTCCTCGAGACCTGCAGGAGGAGGCTGAGCG

Ace file of the UniGene sp_v3.0_unigene158796 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type-3 (Fragment) n=1 Tax=Acanthamoeba castellanii RepID=PSA3_ACACA	-	-	0.0	80%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Proteasome subunit alpha type	-	-	4.476e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	2.529e-37	-

Source	Gene names
Sma3	At2g27020; CHLREDRAFT_183771; GSVIVT00023345001; LOC_Os01g59600; MICPUN_108591; OSJNBa0088I06.6; OSTLU_7255; Os01g0811100; Os05g0490800; OsI_04163; OsI_20428; OsJ_19022; Ot10g03220; P0425G02.8; P0468B07.45; PAG1; PHYPADRAFT_169617; PHYPADRAFT_184238; POA7

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27020.1	PAG1 20S proteasome alpha subunit G1 chr2:11528515-11530858 REVERSE LENGTH=249	60%
RefSeq	Arabidopsis thaliana	NP_180270.1	proteasome subunit alpha type-3 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002299648.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPU7

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 132 - 249

Fln protein: DPIQGRVLCERLSSFVQLYTLYGSVRPFGCSVLLGCVDKQGPQLFMIEPSGTSWGYYACAIGKGSRTAKTELEKLKLSEMTAREAVKEAARIIHLVHDDVKDKAFELELSWICEETKNLHQFVPRDLQEEAE

Protein Length: 133

Fln nts: GATCCCATTCAAGGCAGAGTGCTGTGCGAGCGGCTCTCGAGCTTCGTGCAGCTCTACACGCTCTATGGCTCCGTGAGGCCGTTTGGATGTTCGGTGCTTTTAGGATGTGTAGATAAGCAGGGACCACAGTTGTTCATGATCGAACCATCCGGCACTTCATGGGGTTACTACGCTTGTGCAATTGGTAAAGGCAGTAGGACCGCTAAAACGGAATTGGAGAAGCTTAAGCTGAGCGAGATGACTGCGCGGGAAGCTGTCAAAGAAGCCGCCAGAATAATTCACTTGGTGCACGACGATGTGAAGGACAAAGCCTTTGAGCTGGAATTGAGCTGGATCTGCGAAGAGACGAAGAATCTTCATCAATTCGTTCCTCGAGACCTGCAGGAGGAGGCTGAGCG

Fln Alignment:

HLKU4M004H7IDD___DPIQGRVLCERLSSFVQLYTLYGSVRPFGCSVLLGCVDKQGPQLFMIEPSGTSWGYYACAIGKGSRTAKTELEKLKLSEMTAREAVKEAARIIHLVHDDVKDKAFELELSWICEETKNLHQFVPRDLQEEAE
A9NPU7________________EPIPIKELCERVASYVHLCTLYWWLRPFGSGVILGGYDRDGPQLYMVEPSGVAYRYFGTAIGKGRQAAKTEIEKLKLSEMTCREGVVEVAKIIYGVHDEAKDKAFELEMSWICDESKKQHQKVPADLLEEAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain