SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158756

Length: 379 nt

UniGene Fasta

>sp_v3.0_unigene158756
AAAAGAAATAGATTTGTTGGAAAAGACTGGGTTACGATTGCCCAGGAGCAAAAAGACTGGAACTACTATTGCTGGTCTGATCTTCAAGGATGGAGTCGTTCTAGGGCGCAGATACTCGCGCTACCATGGGCCCCATTGTGAGTGACAAGAACTGCGAAAAAATCCACTACATTACCGACAACATTTGGTGTTGTGGTGCTGGTACTTCAGCAGATACAGAAAACACGACTGCCCTTATAAGTTCCAAGCTTAGAACTTCATCGTCTGGCAACAGGAAGGCAACCACGAGTCATCACTGCTTTGACCATGTTGAAAAGATGCTCTTCAGGTACCAAGGCCATATCAGCGCTGCCCTTGTCTTAGGTGGCGTTGACGTCAC

Ace file of the UniGene sp_v3.0_unigene158756

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Eptatretus stoutii RepID=C9K0Z2_EPTST	-	-	1.0e-31	63%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	AT3G27430; At3g27430; At5g40580; CHLREDRAFT_186317; GSVIVT00030725001; K1G2.15; MICPUCDRAFT_27663; MICPUN_107407; MNF13.10; MtrDRAFT_AC150800g35v2; OJ1097_A12.2; Os05g0187000; OsI_18743; OsJ_17385; OsPBB1; Ot02g04420; PBB1; PBB2; PHATRDRAFT_5311; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27430.2	PBB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein chr3:10152910-10155052 FORWARD LENGTH=273	2.0e-30	59%
RefSeq	Arabidopsis thaliana	NP_001189989.1	proteasome subunit beta type-7-A [Arabidopsis thaliana]	3.0e-30	59%
RefSeq	Populus trichocarpa	XP_002323800.1	predicted protein [Populus trichocarpa]	3.0e-29	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg: Overlapping hits, possible frame ERROR between 133 and 105, Distance to subject end: 128 aas, your sequence is shorter than subject: 126 - 273

Fln protein: KEIDLLEKTGLRLPRSKKTGTTIAGLIFKDGVVLxxxxxxxxxxxIVSDKNCEKIHYITDNIWCCGAGTSADTENTTALISSKLRTSSSGNRKATTSHHCFDHVEKMLFRYQGHISAALVLGGVDV

Protein Length: 127

Fln nts: AAAAGAAATAGATTTGTTGGAAAAGACTGGGTTACGATTGCCCAGGAGCAAAAAGACTGGAACTACTATTGCTGGTCTGATCTTCAAGGATGGAGTCGTTCTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGTGAGTGACAAGAACTGCGAAAAAATCCACTACATTACCGACAACATTTGGTGTTGTGGTGCTGGTACTTCAGCAGATACAGAAAACACGACTGCCCTTATAAGTTCCAAGCTTAGAACTTCATCGTCTGGCAACAGGAAGGCAACCACGAGTCATCACTGCTTTGACCATGTTGAAAAGATGCTCTTCAGGTACCAAGGCCATATCAGCGCTGCCCTTGTCTTAGGTGGCGTTGACGTCAC

Fln Alignment:

HLKU4M004H64WL___DLLEKTGLRLPRSKKTGTTIAGLIFKDGVVLxxxxxxxxxxIVSDKNCEKIHYITDNIWCCGAGTSADTENTTALISSKLRTSSSGNRKATTSHHCFDHVEKMLFRYQGHISAALVLGGVD
A9NYV8________________EMLAKKGVQSPSFRKTGTTIVGLVFQDGVILxxxxxxxxxxIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain