SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158590

Length: 370 nt

UniGene Fasta

>sp_v3.0_unigene158590
TCGAAAGCAACCTGCGTCTGGTGGTGAAGATCGCGCGACGGTACGTCAATCGCGGCCTTTCCCTGCTCGACCTGATCGAAGAGGGCAACCTCGGGCTGATCCGTGCGGTGGAGAAATTCGACCCCGAGCGCGGCTTCCGCTTCTCCACCTACGCGACCTGGTGGATTCGTCAGACCATCGAACGGGCCATCATGAATCAGACCCGCACCATTCGATTGCCGATCCACGTGGTGAAGGAGCTCAACGTCTACCTGCGGGCCGCTCGCGAGCTGACCCACAAGCTGGACCACGAGCCGTCGCCCGAGGAAATCGCCAACCTGCTCGAGAAGCCGGTGGACGAGGTGAAACGAATGCTCGGTCTGAACGAGCG

Ace file of the UniGene sp_v3.0_unigene158590

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA polymerase sigma factor rpoS n=10 Tax=Pseudomonas RepID=RPOS_PSEAE	-	-	0.0	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	RNA polymerase sigma factor	-	-	8.307e-20	-

Source	Gene names
Sma3	MICPUCDRAFT_47508; MICPUN_100150; PHATRDRAFT_17029; PHATRDRAFT_9312; PHYPADRAFT_160930; PHYPADRAFT_166875; PHYPADRAFT_178031; PHYPADRAFT_206687; POPTRDRAFT_809851; PpSig1; PpSig2; Sig1; Sig2; THAPSDRAFT_33682; THAPSDRAFT_33891; rpoD; rpoD2; rpoD_2; sigA;

Source	GOs	Term	Type	Identity
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sigma factor activity	GO:0016987	Molecular Function	-
Sma3	transcription initiation, DNA-dependent	GO:0006352	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase sigma-70 factor	IPR000943	-	-
Sma3	RNA polymerase sigma-70 region 3	IPR007624	-	-
Sma3	RNA polymerase sigma-70 region 2	IPR007627	-	-
Sma3	RNA polymerase sigma-70 region 4	IPR007630	-	-
Sma3	RNA polymerase sigma-70 region 1.2	IPR009042	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	RNA polymerase sigma-70	IPR014284	-	-
Sma3	RNA polymerase sigma factor, SigB/SigC/SigD, plastid	IPR016262	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002326192.1	predicted protein [Populus trichocarpa]	2.0e-32	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQB0

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 122 - 495

Fln protein: ESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVDEVKRMLGLNE

Protein Length: 123

Fln nts: TCGAAAGCAACCTGCGTCTGGTGGTGAAGATCGCGCGACGGTACGTCAATCGCGGCCTTTCCCTGCTCGACCTGATCGAAGAGGGCAACCTCGGGCTGATCCGTGCGGTGGAGAAATTCGACCCCGAGCGCGGCTTCCGCTTCTCCACCTACGCGACCTGGTGGATTCGTCAGACCATCGAACGGGCCATCATGAATCAGACCCGCACCATTCGATTGCCGATCCACGTGGTGAAGGAGCTCAACGTCTACCTGCGGGCCGCTCGCGAGCTGACCCACAAGCTGGACCACGAGCCGTCGCCCGAGGAAATCGCCAACCTGCTCGAGAAGCCGGTGGACGAGGTGAAACGAATGCTCGGTCTGAACGAGCG

Fln Alignment:

HLKU4M004H999P___NLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANL
B8LQB0________________NLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain