SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158505

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene158505
CCTCTTCCCTTCCCCTTCTCACCCAAGAAGAAGTGTCTCATCATGGGTGCCTACAAATATCTTGAGGAGCTTTATAAGAAAAAGCAATCTGATGTAATCCGTTTTTTGAACAGAATTAGATGTTGGGAGCTTAGACATAGACCCGCTGTTCACCGTGCTTCAAGACCAACTCGTCCCGATAAGGCTCGTCGTCTTGGCTATAAGGC

Ace file of the UniGene sp_v3.0_unigene158505

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L15 n=1 Tax=Pfiesteria piscicida RepID=E8Z6E0_PFIPI	-	-	8.0e-14	70%
FL-Next	sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Ribosomal protein L15	-	-	4.2039e-45	-

Source	Gene names
Sma3	40.t00012; At4g16720; At4g17390; BiRP2; CHLREDRAFT_76376; FCAALL.416; GSVIVT00019176001; LOC_Os03g40180; MICPUCDRAFT_31849; MICPUN_55312; OJ1523_A02.2; OSJNBa0087M10.1; OSTLU_14085; Os03g0598800; OsI_12507; OsI_12513; OsI_19264; OsJ_11650; OsJ_17876; Ot02

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L15e	IPR000439	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G16720.1	Ribosomal protein L23/L15e family protein chr4:9400156-9401315 REVERSE LENGTH=204	5.0e-16	72%
RefSeq	Arabidopsis thaliana	NP_193470.1	60S ribosomal protein L15-2 [Arabidopsis thaliana]	7.0e-16	72%
RefSeq	Populus trichocarpa	XP_002338230.1	predicted protein, partial [Populus trichocarpa]	6.0e-16	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNP6

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 54 - 204

Fln protein: MGAYKYLEELYKKKQSDVIRFLNRIRCWELRHRPAVHRASRPTRPDKARRLGYK

Protein Length: 55

Fln nts: CCTCTTCCCTTCCCCTTCTCACCCAAGAAGAAGTGTCTCATC_-_ATGGGTGCCTACAAATATCTTGAGGAGCTTTATAAGAAAAAGCAATCTGATGTAATCCGTTTTTTGAACAGAATTAGATGTTGGGAGCTTAGACATAGACCCGCTGTTCACCGTGCTTCAAGACCAACTCGTCCCGATAAGGCTCGTCGTCTTGGCTATAAGGC

Fln Alignment:

HLKU4M004H8JVP___MGAXXXXXXXXXXXQSDVIRFLNRIRCWELRHRPAVHRASRPTRPDKARRLGYK
A9NNP6________________MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain