SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158442

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene158442
AGAGAACAAGAGATCACACAGAATGTTTCTCACCAGGACTGAGTACGATCGTGGCGTGAACACCTTCTCCCCTGAGGGTCGTCTCTTCCAGGTCGAGTATGCCATTGAGGCCATCAAGCTGGGCTCCACTGCGATCGGCATCCAGACTTCTGAGGGTGTGATCCTGGCTGTGGAGAAGCGCCTCACGTCGCCCCTTCTCGAGCCCAGCAGCGTGGAGAAGATTATGGAGATCGACTCTCACATCGGTGCCGCCATGAGCGGTCTCACTGGAGATGCCAAGACCCTTATCGACTACGCCCGAGTTGAAGCACAGAACCACACCTTCACGTTTGATGAGCCCATGTCCGTCGAGTCGTGCACGCAGGCCATCTGCGACCTCGCCCTTCGGCTTCGGCGAGGACCG

Ace file of the UniGene sp_v3.0_unigene158442

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus RepID=D7G614_ECTSI	-	-	0.0	83%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Proteasome subunit alpha type	-	-	2.271e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	1.117e-35	-

Source	Gene names
Sma3	At1g53850; At3g14290; At3g22110; CHLREDRAFT_184847; GSVIVT00007080001; GSVIVT00033998001; MICPUCDRAFT_49545; MICPUN_107684; MKA23.2; MLN21.8; OSTLU_119626; OSTLU_38146; Os11g0615700; OsI_12722; OsI_36813; OsJ_34630; Ot10g01180; PAC1; PAE1; PAE2; PHATR_282

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14290.1	PAE2 20S proteasome alpha subunit E2 chr3:4764364-4766381 FORWARD LENGTH=237	80%
RefSeq	Arabidopsis thaliana	NP_001077717.1	proteasome subunit alpha type-5-A [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002331192.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK23

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 127 - 237

Fln protein: MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVILAVEKRLTSPLLEPSSVEKIMEIDSHIGAAMSGLTGDAKTLIDYARVEAQNHTFTFDEPMSVESCTQAICDLALRLRRGP

Protein Length: 128

Fln nts: AGAGAACAAGAGATCACACAGA_-_ATGTTTCTCACCAGGACTGAGTACGATCGTGGCGTGAACACCTTCTCCCCTGAGGGTCGTCTCTTCCAGGTCGAGTATGCCATTGAGGCCATCAAGCTGGGCTCCACTGCGATCGGCATCCAGACTTCTGAGGGTGTGATCCTGGCTGTGGAGAAGCGCCTCACGTCGCCCCTTCTCGAGCCCAGCAGCGTGGAGAAGATTATGGAGATCGACTCTCACATCGGTGCCGCCATGAGCGGTCTCACTGGAGATGCCAAGACCCTTATCGACTACGCCCGAGTTGAAGCACAGAACCACACCTTCACGTTTGATGAGCCCATGTCCGTCGAGTCGTGCACGCAGGCCATCTGCGACCTCGCCCTTCGGCTTCGGCGAGGACCG

Fln Alignment:

HLKU4M004INWDC___MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVILAVEKRLTSPLLEPSSVEKIMEIDSHIGAAMSGLTGDAKTLIDYARVEAQNHTFTFDEPMSVESCTQAICDLALRLRRG
A9NK23________________MFLTRSEYDRGVNTFSPEGRLFQVEYAMEAIKLGSTAVGLKTKRGIILAVEKRITSPLLEPSSVEKIMEIDEHVGCAMSGLIADARTLVEHARVETQNHRFSYGEPMSTESTTQALCDLALRFGEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain