SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158415

Length: 221 nt

UniGene Fasta

>sp_v3.0_unigene158415
CGTCTAACTTGCAAAGCTGGCCGTGGAATAATTAGAGTCAATGGTGTTCCAGTTGATGTTATTGAACCAGCAATCCTCAGAACTAAGATTTACGAGCCAGTCTACCTTCTGGGCAAGAAGAGATTCTCTGAGCTCGACATCAGAATCAGAACCCGCGGAGGTGGTTATACTTCTCAAATATATGCAATCAGACAAGCCATTTCAAAAGCAATCGTCGCCTA

Ace file of the UniGene sp_v3.0_unigene158415

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S16 n=2 Tax=Oomycetes RepID=D0NPA9_PHYIT	-	-	2.0e-21	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	40S ribosomal protein S16	-	-	8.62e-33	-

Source	Gene names
Sma3	At2g09990; At3g04230; At5g18380; F20L16.100; F7B19.13; GSVIVT00019940001; GSVIVT00036621001; MICPUCDRAFT_62402; MICPUN_93705; OSTLU_31856; OsI_033743; OsI_036072; Ot05g03930; PHATRDRAFT_17519; PHYPADRAFT_149093; PHYPADRAFT_176556; PHYPADRAFT_194861; PHYPA

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	GO:0008759	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	lipid A biosynthetic process	GO:0009245	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S9	IPR000754	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal	IPR015870	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G18380.1	Ribosomal protein S5 domain 2-like superfamily protein chr5:6090253-6090693 REVERSE LENGTH=146	6.0e-26	60%
RefSeq	Arabidopsis thaliana	NP_001190330.1	40S ribosomal protein S16-3 [Arabidopsis thaliana]	7.0e-26	60%
RefSeq	Populus trichocarpa	XP_002312518.1	predicted protein [Populus trichocarpa]	1.0e-28	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTC7

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 73 - 143

Fln protein: RLTCKAGRGIIRVNGVPVDVIEPAILRTKIYEPVYLLGKKRFSELDIRIRTRGGGYTSQIYAIRQAISKAIVA

Protein Length: 74

Fln nts: CGTCTAACTTGCAAAGCTGGCCGTGGAATAATTAGAGTCAATGGTGTTCCAGTTGATGTTATTGAACCAGCAATCCTCAGAACTAAGATTTACGAGCCAGTCTACCTTCTGGGCAAGAAGAGATTCTCTGAGCTCGACATCAGAATCAGAACCCGCGGAGGTGGTTATACTTCTCAAATATATGCAATCAGACAAGCCATTTCAAAAGCAATCGTCGCCTA

Fln Alignment:

HLKU4M004IOPD3___CKAGRGIIRVNGVPVDVIEPAILRTKIYEPVYLLGKKRFSELDIRIRTRGGGYTSQIYAIRQAISKAIVA
A9NTC7________________CKRGRGLIKINGCPIELIEPEILRYKAFEPILLLGRQRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain