SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158407

Length: 336 nt

UniGene Fasta

>sp_v3.0_unigene158407
CAGATGTCACATTGAGCAAATTGATGGTGTGAATAGAGTATCATCGTTTAATTACTACACTCTGAGTTCACCCAGTCGATTCCGCCATCGTCTCATCTTTCCAAATCAACGCCATGGCTTCAGGACGACTCGACGGTAAGGTGGCCATTATCACCGGCGCCGCCTCAGGATTCGGCAAAGGCATCGCCATCAAATTCGTCAAGGAGGGCTGCAAGGTCCTCATAGCAGACCTTTCGGAAGATGCCGGCCAGGCAGCTGCGCAAGAGCTTGGTTGCAGCTTTAAGAGAGGCGATGTCACCAAGAAGGCAGACTGGGAAGACCTCCTGAGCGAGGCCC

Ace file of the UniGene sp_v3.0_unigene158407

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oxidoreductase, short-chain dehydrogenase/reductase family n=2 Tax=Metarhizium RepID=E9DT74_METAQ	-	-	6.0e-22	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	Gene names
Sma3	OJ1343_D04.111; OsI_27226; P0453E03.131;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G03140.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:1392191-1393662 FORWARD LENGTH=343	2.0e-14	47%
RefSeq	Arabidopsis thaliana	NP_567251.2	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	2.0e-14	47%
RefSeq	Populus trichocarpa	XP_002321038.1	predicted protein [Populus trichocarpa]	1.0e-14	45%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ34

Fln msg: Distance to subject end: 199 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 90 - 294

Fln protein: VHPVDSAIVSSFQINAMASGRLDGKVAIITGAASGFGKGIAIKFVKEGCKVLIADLSEDAGQAAAQELGCSFKRGDVTKKADWEDLLSEA

Protein Length: 91

Fln nts: CAGATGTCACATTGAGCAAATTGATGGTGTGAATAGAGTATCATCGTTTAATTACTACACTCTGAGTTCACCCAGTCGATTCCGCCATCGTCTCATCTTTCCAAATCAACGCCATGGCTTCAGGACGACTCGACGGTAAGGTGGCCATTATCACCGGCGCCGCCTCAGGATTCGGCAAAGGCATCGCCATCAAATTCGTCAAGGAGGGCTGCAAGGTCCTCATAGCAGACCTTTCGGAAGATGCCGGCCAGGCAGCTGCGCAAGAGCTTGGTTGCAGCTTTAAGAGAGGCGATGTCACCAAGAAGGCAGACTGGGAAGACCTCCTGAGCGAGGCCC

Fln Alignment:

HLKU4M004IE6ZG___DSAIVSSFQINAMASGRLDGKVAIITGAASGFGKGIAIKFVKEGCKVLIADLSEDAGQAAAQELG--CSFKRGDVTKKAD
A9NQ34________________DSACVGSLSFNG-SDRRLEGKVAIITGGAMGIGEAIVRLFTKHGAKVIIADFADEAGKNLAEHLSPLATYVHCDVSKEQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain