SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158359

Length: 244 nt

UniGene Fasta

>sp_v3.0_unigene158359
CTCTGGTCCCGTCTCTGGATTCGAGTCCTCTGATATCCTGAACATGGGCGGCCTGATTGTCCAGAACCAGATCTTCGCTGAGGTGACCAACGCTGCTGGTCTGGGCGCTGCTTACAAGATGGGCAAGTTCGACGGTATTCTGGGTCTTGCATTCCCTGTTCTGTCTGTGAACCATGTCCCCACTGCCTTCGAGAATGTGGTCAGCCAGGGCCTGGTGGACGAGGCTCTGTTCTCTTTCTACCTC

Ace file of the UniGene sp_v3.0_unigene158359

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartyl protease family A01A, putative n=2 Tax=Phytophthora infestans RepID=D0NBJ4_PHYIT	-	-	2.0e-19	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Aspartic protease	-	-	3.905e-08	-

Source	Gene names
Sma3	PHATRDRAFT_16168;

Source	GOs	Term	Type	e value	Identity
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002319454.1	predicted protein [Populus trichocarpa]	1.0e-16	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRP2

Fln msg: Distance to subject end: 243 aas, your sequence is shorter than subject: 81 - 471

Fln protein: SGPVSGFESSDILNMGGLIVQNQIFAEVTNAAGLGAAYKMGKFDGILGLAFPVLSVNHVPTAFENVVSQGLVDEALFSFYL

Protein Length: 82

Fln nts: CTCTGGTCCCGTCTCTGGATTCGAGTCCTCTGATATCCTGAACATGGGCGGCCTGATTGTCCAGAACCAGATCTTCGCTGAGGTGACCAACGCTGCTGGTCTGGGCGCTGCTTACAAGATGGGCAAGTTCGACGGTATTCTGGGTCTTGCATTCCCTGTTCTGTCTGTGAACCATGTCCCCACTGCCTTCGAGAATGTGGTCAGCCAGGGCCTGGTGGACGAGGCTCTGTTCTCTTTCTACCTC

Fln Alignment:

HLKU4M004I3F0P___SGPVSGFESSDILNMGGLIVQNQIFAEVTNAAGLGAAYKMGKFDGILGLAFPVLSVNHVPTAFENVVSQGLVDEALFSFYL
B8LRP2________________SGSVSGYLGQDHVTAGDLVVKDQVFAEVTQEPGL--TFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain