SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158344

Length: 325 nt

UniGene Fasta

>sp_v3.0_unigene158344
TCTTGTGTGGGGAATAGCTTTACTGGGTTGTGTCGTTTCAGTGTTATCACTTGACAATGGACTTGGTCTCTTGCCTCCAATGGGATGGAGTACATGGTGTACAAAATCAATTGAATGCTTAGATGATTGGTGCTCTGAGAGAGAAATTCATGAAATTGCGGAAGCAATGGTCCAAAATGGAATGAAGGATCTCGGATACAATTATATTAATTTAGACGATTGTTGGGCTGGTCCAAGAGATGCTAACGGAGAACTCACTGGTGACCCAAGAAGATTTCCATCTGGTATGAAAGCTCTGGCAGATTACGTACACTCTCTTGATCTC

Ace file of the UniGene sp_v3.0_unigene158344

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-galactosidase n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CF83_9EUKA	-	-	1.0e-27	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Alpha-galactosidase	-	-	3.982e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-galactosidase.	EC:3.2.1.22	-	1.783e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Galactose metabolism	00052	1.783e-10	%
Sma3	Glycerolipid metabolism	00561	1.783e-10	%
Sma3	Sphingolipid metabolism	00600	1.783e-10	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603	1.783e-10	%

Source	Gene names
Sma3	At5g08380; F8L15_110; GSVIVT00002619001; POPTRDRAFT_566552; RCOM_0612700; gal1;

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	alpha-galactosidase activity	GO:0004557	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08380.1	AtAGAL1, AGAL1 alpha-galactosidase 1 chr5:2694851-2697616 REVERSE LENGTH=410	4.0e-24	51%
RefSeq	Arabidopsis thaliana	NP_196455.1	alpha-galactosidase 1 [Arabidopsis thaliana]	6.0e-24	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV07

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 108 - 377

Fln protein: LVWGIALLGCVVSVLSLDNGLGLLPPMGWSTWCTKSIECLDDWCSEREIHEIAEAMVQNGMKDLGYNYINLDDCWAGPRDANGELTGDPRRFPSGMKALADYVHSLDL

Protein Length: 109

Fln nts: TCTTGTGTGGGGAATAGCTTTACTGGGTTGTGTCGTTTCAGTGTTATCACTTGACAATGGACTTGGTCTCTTGCCTCCAATGGGATGGAGTACATGGTGTACAAAATCAATTGAATGCTTAGATGATTGGTGCTCTGAGAGAGAAATTCATGAAATTGCGGAAGCAATGGTCCAAAATGGAATGAAGGATCTCGGATACAATTATATTAATTTAGACGATTGTTGGGCTGGTCCAAGAGATGCTAACGGAGAACTCACTGGTGACCCAAGAAGATTTCCATCTGGTATGAAAGCTCTGGCAGATTACGTACACTCTCTTGATCTC

Fln Alignment:

HLKU4M004JNLD2___WGIALLGCVVSVLSLDNGLGLLPPMGWSTWCTKSIECLDDWCSEREIHEIAEAMVQNGMKDLGYNYINLDDCWAG-PRDANGELTGDPRRFPSGMKALADYVH
A9NV07________________WSVLYNNSNYGKFQLNNGVGQTPQMGWNSW--NFFACA---INETVIRETADALISTGLADLGYVYVNIDDCWSSTTRNLEGDLEPDPKTFPSGIKALADYVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain