SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158340

Length: 362 nt

UniGene Fasta

>sp_v3.0_unigene158340
ATTACCCTACCCTGCACCCTGCACCCTGCACCCAGCACGCGGGCCGGCGCCGTCTACACGCAGCTCACCGTGCCTCACCATGGAGACGCTCATCGGTTTCGTCGGCAAAGACTACGTACTCGTCGCGGCGGATACGTCGGCTGCGAGATCCATTGTCATTTTCAAGGACGATGAAGACAAAATTCTGCCACTGGATTCCAGTAAGATGCTGGGAGTGGTTGGGCCACCTGGCGATCGCGTCAACTTTTCAGAGTACATCATGCGCAACGTGCACCTGTACAATTTGAAGAGCACCGCTCCCTTGAGTACGCATGCAGCTGCCAATTTTACCAGGAACGAACTGGCCCGAGCACTTCGCTCAA

Ace file of the UniGene sp_v3.0_unigene158340

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit beta type n=4 Tax=Andropogoneae RepID=C5WNX2_SORBI	-	-	4.0e-26	60%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Proteasome chain protein	-	-	1.072e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	1.173e-08	-

Source	Gene names
Sma3	At3g22630; At4g14800; CHLREDRAFT_193424; F16J14.18; GSVIVT00023752001; LOC_Os03g48930; MICPUN_109546; OSJNBb0021P10.3; Os03g0695600; OsI_13132; PBD1; PBD2; PHYPADRAFT_144284; PHYPADRAFT_208929; POPTRDRAFT_678915; POPTRDRAFT_814139; PRCGA; PRCGB; RCOM_0911

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G14800.2	-	1.0e-29	56%
RefSeq	Arabidopsis thaliana	NP_193216.1	proteasome subunit beta type-2-B [Arabidopsis thaliana]	1.0e-29	56%
RefSeq	Populus trichocarpa	XP_002332670.1	predicted protein [Populus trichocarpa]	2.0e-29	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKA9

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 94 - 215

Fln protein: METLIGFVGKDYVLVAADTSAARSIVIFKDDEDKILPLDSSKMLGVVGPPGDRVNFSEYIMRNVHLYNLKSTAPLSTHAAANFTRNELARALRS

Protein Length: 95

Fln nts: ATTACCCTACCCTGCACCCTGCACCCTGCACCCAGCACGCGGGCCGGCGCCGTCTACACGCAGCTCACCGTGCCTCACC_-_ATGGAGACGCTCATCGGTTTCGTCGGCAAAGACTACGTACTCGTCGCGGCGGATACGTCGGCTGCGAGATCCATTGTCATTTTCAAGGACGATGAAGACAAAATTCTGCCACTGGATTCCAGTAAGATGCTGGGAGTGGTTGGGCCACCTGGCGATCGCGTCAACTTTTCAGAGTACATCATGCGCAACGTGCACCTGTACAATTTGAAGAGCACCGCTCCCTTGAGTACGCATGCAGCTGCCAATTTTACCAGGAACGAACTGGCCCGAGCACTTCGCTCAA

Fln Alignment:

HLKU4M004JKXD1___METLIGFVGKDYVLVAADTSAARSIVIFKDDEDKILPLDSSKMLGVVGPPGDRVNFSEYIMRNVHLYNLKSTAPLSTHAAANFTRNELARALR
A9NKA9________________MECVFGLVGDGFTLIAGDTSAVQSIVVQKTSEDKIMILDSHKLLGASGESGDRVQFTEYIQKNVHLYQFRNGIPLSTAATANFTRGELATALR

SSRs (tot: 1)

Start position	End position	Sequence	Length
9	33	ACCCTGC ACCCTGC ACCCTGC ACCC	25

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain