SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158329

Length: 345 nt

UniGene Fasta

>sp_v3.0_unigene158329
TTAGAGTGCTATTAAGTGGCGAAGGCAGTGATGAAATTACTGCTGGTTATCGCTATTTTCGCGATGCACCTAATGCCAAAGAATTACATGATGAAACGATTCGTTTGCTTAGTGAACTATATATGTTTGATAACTTGCGAACAGACAGAACGATGGCACATTGGGGATTAGAAGTGCGAGTTCCATTTTTAGATCATGATTATGTGGAACTAATTAAAACAGTTGATCCTAAACTATTGATGTATACTGCAGAAAATATGGAAAAGAAAGTGGTAAGAGATAGTTTTACGGGATACCTGCCCCATGAAATATTATATCGTAGCAAAGAAGCATTTTCAGATGCAG

Ace file of the UniGene sp_v3.0_unigene158329

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable asparagine synthetase [glutamine-hydrolyzing] n=2 Tax=Acanthamoeba polyphaga mimivirus RepID=ASNS_MIMIV	-	-	2.0e-39	69%
FL-Next	sp=Asparagine synthetase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Asparagine synthetase	-	-	3.794e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Asparagine synthase (glutamine-hydrolyzing).	EC:6.3.5.4	-	1.183e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	1.183e-27	%
Sma3	Nitrogen metabolism	00910	1.183e-27	%
Sma3	Metabolic pathways	01100	1.183e-27	%
Sma3	Biosynthesis of secondary metabolites	01110	1.183e-27	%

Source	Gene names
Sma3	ANS1; AS2; AS3; ASN1; ASN2; ASNB; As1; AsAS2; AsnS3; AsnS4; At3g47340; At5g65010; CHLREDRAFT_109602; GSVIVT00024074001; HAS2; LOC_Os03g18130; MICPUN_113949; Os03g0291500; OsI_11112; OsJ_10452; PHYPADRAFT_173106; PHYPADRAFT_226188; POPTRDRAFT_722643; POPTR

Source	GOs	Term	Type	Identity
Sma3	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	-
Sma3	asparagine biosynthetic process	GO:0006529	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	cellular amino acid catabolic process	GO:0009063	Biological Process	-
Sma3	response to absence of light	GO:0009646	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to glucose stimulus	GO:0009749	Biological Process	-
Sma3	response to fructose stimulus	GO:0009750	Biological Process	-
Sma3	cellular response to sucrose starvation	GO:0043617	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Asparagine synthase, glutamine-hydrolyzing	IPR006426	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G65010.2	-	6.0e-30	47%
RefSeq	Arabidopsis thaliana	NP_851272.1	asparagine synthetase 2 [Arabidopsis thaliana]	8.0e-30	47%
RefSeq	Populus trichocarpa	XP_002299991.1	predicted protein [Populus trichocarpa]	3.0e-30	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMV0

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 114 - 591

Fln protein: RVLLSGEGSDEITAGYRYFRDAPNAKELHDETIRLLSELYMFDNLRTDRTMAHWGLEVRVPFLDHDYVELIKTVDPKLLMYTAENMEKKVVRDSFTGYLPHEILYRSKEAFSDA

Protein Length: 115

Fln nts: TTAGAGTGCTATTAAGTGGCGAAGGCAGTGATGAAATTACTGCTGGTTATCGCTATTTTCGCGATGCACCTAATGCCAAAGAATTACATGATGAAACGATTCGTTTGCTTAGTGAACTATATATGTTTGATAACTTGCGAACAGACAGAACGATGGCACATTGGGGATTAGAAGTGCGAGTTCCATTTTTAGATCATGATTATGTGGAACTAATTAAAACAGTTGATCCTAAACTATTGATGTATACTGCAGAAAATATGGAAAAGAAAGTGGTAAGAGATAGTTTTACGGGATACCTGCCCCATGAAATATTATATCGTAGCAAAGAAGCATTTTCAGATGCAG

Fln Alignment:

HLKU4M004JFV0B___RVLLSGEGSDEITAGYRYFRDAPNAKELHDETIRLLSELYMFDNLRTDRTMAHWGLEVRVPFLDHDYVELIKTVDP--KLLMYTAENMEKKVVRDSF----TGYLPHEILYRSKEAFSD
B8LMV0________________KMVLSGEGSDEIFGGYLYFHKAPNREEFHQETCRKIKALHMYDCLRANKSTSAWGVEARVPFLDKEFINIAMDIDPDWKMVKPDIGRIEKWVLRKAFDEEQNPYLPKHILYRQKEQFSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain