SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158300

Length: 421 nt

UniGene Fasta

>sp_v3.0_unigene158300
AACTGAGAGGGACAACAGTTTTGGTTGAATATGCAACCAATTCTGGTAACTTCATTACAGTCAGTAGGGTCATTCTCGAAAAGATTCCTCCAGAAGATACCAAACGCTCCTACGAATATGATGAATACATGTTTCATTTCATGATTCACCAAGGAATCACTTATCTTTGTATGTCAGAGAAATCATTTGCAAGAAGAATTTGTTTCACCTTTTTAGAAGACATCAAGAATAGATTCCTAGCAACTTATGGAAACGAACAAATCTTTGCTGCATTGGCATTCGGGATGAACCAAAGTTTCAGTGGTACTTTGAGTCAACAATTACAATACTATTCCTACGACCCAAGTGCTGATCGAATTGCAGAAGCCAAGAATCAAATCGAAAACACAAAGTCCATCATGGTTTCAAACATTGACGAACT

Ace file of the UniGene sp_v3.0_unigene158300

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vesicle-associated membrane protein, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNF9_PHYIT	-	-	4.0e-32	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Vesicle-associated membrane protein 712	-	-	1.945e-09	-

Source	Gene names
Sma3	At2g25340; At4g32150; GSVIVT00032676001; Os06g0174400; OsI_21875; OsJ_20311; P0015E04.6; PHATRDRAFT_17683; PHYPADRAFT_188169; PHYPADRAFT_209237; PHYPADRAFT_222357; SybA; T22F11.7; VAMP711; VAMP712; VAMP71A1; VAMP71A2; VAMP71A3; VAMP7C;

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Synaptobrevin	IPR001388	-	0.0	-
Sma3	Longin	IPR010908	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G32150.1	VAMP711, ATVAMP711 vesicle-associated membrane protein 711 chr4:15526407-15527651 REVERSE LENGTH=219	4.0e-38	47%
RefSeq	Arabidopsis thaliana	NP_194942.1	vesicle-associated membrane protein 711 [Arabidopsis thaliana]	6.0e-38	47%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUI3

Fln msg: Distance to subject end: 69 aas, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is shorter than subject: 139 - 221

Fln protein: LRGTTVLVEYATNSGNFITVSRVILEKIPPEDTKRSYEYDEYMFHFMIHQGITYLCMSEKSFARRICFTFLEDIKNRFLATYGNEQIFAALAFGMNQSFSGTLSQQLQYYSYDPSADRIAEAKNQIENTKSIMVSNIDE

Protein Length: 140

Fln nts: AACTGAGAGGGACAACAGTTTTGGTTGAATATGCAACCAATTCTGGTAACTTCATTACAGTCAGTAGGGTCATTCTCGAAAAGATTCCTCCAGAAGATACCAAACGCTCCTACGAATATGATGAATACATGTTTCATTTCATGATTCACCAAGGAATCACTTATCTTTGTATGTCAGAGAAATCATTTGCAAGAAGAATTTGTTTCACCTTTTTAGAAGACATCAAGAATAGATTCCTAGCAACTTATGGAAACGAACAAATCTTTGCTGCATTGGCATTCGGGATGAACCAAAGTTTCAGTGGTACTTTGAGTCAACAATTACAATACTATTCCTACGACCCAAGTGCTGATCGAATTGCAGAAGCCAAGAATCAAATCGAAAACACAAAGTCCATCATGGTTTCAAACATTGACGAACT

Fln Alignment:

HLKU4M004ITLI6___RGTTVLVEYATNSGNFITVSRVILEKIPPEDTKRSYEYDEYMFHFMIHQGITYLCMSEKSFARRICFTFLEDIKNRFLATYGNEQIFAALAFGMNQSFSGTLSQQLQYYSYDP-SADRIAEAKNQIENTKSIMVSNIDE
A9NUI3________________RGTVILAEYTEFTGNFTTVAYQCLQKLPATSNKFTFDCQRHTFNYLVEDGFTYCVVADESVGRQVPIAFLERIKDEFKKRYSDGRAEVAIANGLNQEFGPKLKQHMDYCAQHPEQINKFAKTKAQVAEVKGVMMDNIEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain